Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq527232 98.7 9e-16 seq471353 87.8 2e-12 seq309059 86.0 6e-12 seq371753 84.2 2e-11 >seq527232 Length=272 Score = 98.7 bits (108), Expect = 9e-16 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || |||||||| ||||||||||| ||||||||| |||||| || ||||| || || Sbjct 62 AAGCAAGCAAAATCGCAATGAAGGCCTTCATCTCTAGAAATAAGCTCATTTGAGAAAGTC 121 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 || | |||||||||||||| ||||| | |||||| || ||| Sbjct 122 AAACATGGCATCAATCCTCTCTTTTTAAGCCAAAAAATGGCA 163 >seq471353 Length=212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || |||||||| || ||||| | |||||||||| |||||| || ||||| || || Sbjct 54 AAGCAAGCAAAATCGCAGTGAAGACTCTCATCTCTATAAATAAGCTCATTTGAGAAAGTC 113 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754 || ||||||||||||| || ||||| | |||||| || Sbjct 114 AAACCTGGCATCAATCATCTCTTTTTAAGCCAAAAAAT 151 >seq309059 Length=205 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| |||||||| || ||||||||||||| |||| ||| || || ||||| || || || Sbjct 77 ACAAGCAAAATCGCAGTGAAGGCCCTCATATCTAGAAATGAGCTCATTTGAGAAAGTCAA 136 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 ||||||||||||| | ||||| | |||||| || ||| Sbjct 137 ACCTGGCATCAATCATTTCTTTTTAAGCCAAAAAATGGCA 176 >seq371753 Length=288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 13665 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13724 |||||| || ||||||| ||||| |||| |||||| || ||||| || || || ||||| Sbjct 123 AAAATCGCAGTGAAGGCACTCATATCTAGAAATAAGCTCATTTGAGAAAGTCAAACCTGG 64 Query 13725 CATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||||| ||||| | |||||| || ||| Sbjct 63 CATCAATCCTTTCTTTTTAAGCCAAAAAATGGCA 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474065388045000