Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq736048 87.8 1e-12 >seq736048 Length=1016 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| || | | ||||| || || ||| |||||| || || |||||||| Sbjct 637 CCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCC 696 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| || |||| || | || || || |||||||| | || |||||||| | || Sbjct 697 AATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGGA 756 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| || || || |||||| |||||| || ||| || |||| ||| || Sbjct 757 ATACCCTCCTTGTCCTGGATTTTTGCTTTGACATTATCAATGGTGTCTGAGCTCTCAACT 816 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||| || || | ||||||||||| ||||||||| Sbjct 817 TCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCATG 864 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | |||||||| ||||| |||| || || ||||| |||| | ||||| | Sbjct 23 CATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCT 82 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | || ||||||| ||||| | ||| || |||| ||| || || | || | Sbjct 83 TGTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCAAGAGTGA 142 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||||| ||||| ||||||||||| || ||||| Sbjct 143 TTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351508227406500