Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq736048 167 5e-36 seq702768 147 5e-30 seq109077 147 5e-30 seq726932 129 1e-24 seq689433 129 1e-24 seq313781 123 6e-23 seq611781 116 8e-21 seq662336 111 4e-19 seq113432 105 2e-17 seq258592 95.1 3e-14 seq356231 86.0 1e-11 >seq736048 Length=1016 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| | ||| | || || || || | || ||||| ||||| ||||| |||||| Sbjct 178 ATACCCCCACGTAGGCGGAGAACAAGGTGAAGGGTTGATTCCTTCTGTATATTGTAGTCA 237 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | ||||| ||| |||||||| || || |||||||| ||||||||||| || || || Sbjct 238 GCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTCTGCTGGTCGGGT 297 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || |||||||| ||||| || | ||| || | || Sbjct 298 GGAATACCTTCCTTGTCCTGGATTTTTGCTTTCACATTGTCGATGGTGTCTGAACTCTCA 357 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || ||||| ||||||||||| || || |||||||| ||||| Sbjct 358 ACCTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACAAATATTTGCAT 407 Score = 120 bits (132), Expect = 7e-22 Identities = 136/180 (76%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || ||||||| | ||| | || || || || |||||||||||||| || ||||||||| Sbjct 1 TTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGT 60 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 || |||||||| || ||||| || |||||||| ||||| || ||||| || | || || Sbjct 61 TGGTCAGGAGGAATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTC- 119 Query 104501 CTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || || || || || || |||||||| | || || ||||| |||||||| Sbjct 120 TGAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 179 >seq702768 Length=508 Score = 147 bits (162), Expect = 5e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || || |||| ||||| | ||| || || | || || || Sbjct 297 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTCCAACTGCTTCCCT 238 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| ||||| ||||| || ||||| || |||||||| ||||| || Sbjct 237 GCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGAATTTTTGCCTTC 178 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| |||| || || || | || |||||||||||||| ||||| || || || || Sbjct 177 ACATTATCTATAGTGTCTG-AGCTCTCAACCTCTAGTGTAATTGTCTTTCCCGTCAGGGT 119 Query 104542 TTTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 118 CTTCACAAATATCTGCAT 101 >seq109077 Length=726 Score = 147 bits (162), Expect = 5e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| || ||||||||||| || || || | ||||||| |||||||| || || || || Sbjct 451 TGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCTTCCAGCTGCTTCCC 510 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 || ||||| |||||||| || || || || || || || |||||||| ||||| ||||| Sbjct 511 TGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGGATCTTAGCTTT 570 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| ||| |||||||| ||||| ||||| || || || || Sbjct 571 CACGTTGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTTTCCGGTCAGAGT 630 Query 104542 TTTTACAAATATCTGCATT 104560 ||| ||||| ||||||||| Sbjct 631 TTTAACAAAAATCTGCATT 649 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||||||||| || || |||| ||||||| || || || || || || || Sbjct 224 GTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTTCGCCCATCCTCAAGCTGCTTGCCC 283 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | |||||| || || || || || || || || ||||||||||| ||||| Sbjct 284 GCGAAAATCAACCTCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGAATCTTCGCTTTC 343 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | |||||| | || | || ||||||| ||||| ||||| ||||| | || Sbjct 344 ACATTGTCGATGGTATC-CGAGCTCTCAACCTCTAAGGTAATTGTCTTGCCAGTTAAAGT 402 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 403 CTTCACGAAGATCTGCAT 420 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| | || || || || ||||| || || || ||||| || Sbjct 2 TCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCAGCGAAG 61 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | ||||| ||||| || || || ||||| || ||||||||||||||||| ||||| Sbjct 62 ATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACATTA 121 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| ||| | || ||||| || || || ||||| ||||| || || || || Sbjct 122 TCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTCTTCACG 181 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 182 AAGATTTGCAT 192 >seq726932 Length=530 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | ||| |||| ||||| || || ||||||||| Sbjct 53 GTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCA 112 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || ||||| || ||||| ||||| || || Sbjct 113 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTG 172 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | ||| |||||||| || || ||||| || || || ||| Sbjct 173 ACATTGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 232 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||| ||| Sbjct 233 TTCACGAAGATCTGCATCTTG 253 >seq689433 Length=414 Score = 129 bits (142), Expect = 1e-24 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || |||| || || | ||| || || | || || || Sbjct 218 GTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACCATCCTCCAACTGCTTCCCT 159 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| ||||| ||||| || || || || |||||||| || || || Sbjct 158 GCGAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGAATTTTGGCCTTC 99 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| |||| |||||| || | || ||||||||||| || ||||| || || || || Sbjct 98 ACATTATCTATGGTATCTG-AGCTCTCCACCTCTAGTGTGATCGTCTTTCCCGTCAGGGT 40 Query 104542 TTTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 39 CTTCACAAATATCTGCAT 22 >seq313781 Length=385 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| | || || || || ||||| || || || || || || Sbjct 384 TCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAAG 325 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || |||||||| ||||| || || || || || || ||||||||||||||||| ||||| Sbjct 324 ATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATCTTTGCTTTGACATTA 265 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| ||| | || ||||| || || || ||||| ||||| ||||| || || Sbjct 264 TCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTCACG 205 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 204 AAGATTTGCAT 194 Score = 96.9 bits (106), Expect = 8e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || || |||| ||||||| || || || || || || || Sbjct 162 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGCCCATCCTCAAGCTGCTTGCCG 103 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || ||||| || || || || || ||||| || ||||||||||| ||||| Sbjct 102 GCGAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGAATCTTCGCTTTC 43 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAAT 104523 || || || | ||| ||| ||| ||||| || || || Sbjct 42 ACGTTGTCAATGGTGTCGGAGCTTTCGACCTCCAGGGTGAT 2 >seq611781 Length=262 Score = 116 bits (128), Expect = 8e-21 Identities = 128/169 (76%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 104395 AGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTAT 104454 ||| || || || || || || |||||||||||||| | ||| || || || || || || Sbjct 259 AGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGGAT 200 Query 104455 TCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTTCTAC 104511 |||||| || || || || || || |||||||| || | ||||| ||| ||| || Sbjct 199 TCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCGATTGTATCAGAGCT---TTCCAC 143 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| || || || ||||| ||||| ||||| ||||||||||| |||||| Sbjct 142 CTCAAGCGTGATGGTCTTTCCAGTCAGTGTCTTTACAAATATTTGCATT 94 >seq662336 Length=3756 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| | || || || | ||| || ||||| || || ||||| || | Sbjct 301 TTCCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCTG 242 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||||| | ||| ||||| |||||||| ||||||||||| | ||||| |||||||||| Sbjct 241 CAAGAGTGCGACCATCTTCCAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAG 182 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || ||||| || ||||||| Sbjct 181 GAATGCCTTCCTTGTCCTGAA 161 >seq113432 Length=226 Score = 105 bits (116), Expect = 2e-17 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || |||||||||||||| | ||| || || ||||| || |||||||| Sbjct 225 CCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCTTCC 166 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || || || || || || |||||||| || || ||||| || | || || || || || Sbjct 165 TTGTCTTGGATTTTCGCCTTTACATTGTCAACTGTATC-TGAGCTCTCAACTTCAAGGGT 107 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || ||||| || |||||||| |||||| Sbjct 106 GATGGTCTTTCCGGTGAGTGTCTTAACAAATATTTGCATT 67 >seq258592 Length=216 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || ||||| ||||| || || ||||| || | ||||||||| | ||| ||||| Sbjct 88 CCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTGGATTCAACCTCG 147 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||| ||||| || ||||| || || ||||||||||| Sbjct 148 AGGGTGATGGTCTTCCCAGTTAGGGTTTTCACGAAGATCTGCATTTT 194 >seq356231 Length=770 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || ||||||||||| ||||| || || || ||||| || || ||||||||| Sbjct 88 CCTTCCTTGTCCTGAATCTTAGCTTTGACGTTGTCAACGGTGTCACTGCTCTCTACCTCT 147 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 | || || ||||| || || || ||||| || ||||||||||| || Sbjct 148 AAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAATATCTGCATCTT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1140243823211500