Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq702543 100 1e-16 seq454509 86.0 3e-12 seq426732 86.0 3e-12 seq658057 84.2 1e-11 seq626895 84.2 1e-11 seq507183 84.2 1e-11 >seq702543 Length=5779 Score = 100 bits (110), Expect = 1e-16 Identities = 86/105 (82%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 11428 GAAATATAGA-ATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACC 11484 |||| ||| | ||| ||||| || | || |||||||| | | |||||||| |||| Sbjct 3629 GAAAAATAAATATTTGTAAAACATGATATAATGGCCCATACAGGTCTCGAACCTGTGACC 3688 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 3689 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 3733 >seq454509 Length=1687 Score = 86.0 bits (94), Expect = 3e-12 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 11476 CCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1687 CCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1634 >seq426732 Length=529 Score = 86.0 bits (94), Expect = 3e-12 Identities = 82/104 (79%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAAT-CAAATT---GGCCCATGAAAGGATCGAACCTTCGACCT 11485 ||||||||||| | ||| || |||||| |||||||| | | || ||| | | |||| Sbjct 298 AATATAGAATTGAAAAATGATTCAAATTTATGGCCCATGCAGGTCTCAAACTTGCCACCT 357 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||| ||||| || || ||||||||| |||| Sbjct 358 TCGTGTTATTAGCACGATGCTCTAACTAATTGAGCTAATAGGCC 401 >seq658057 Length=1327 Score = 84.2 bits (92), Expect = 1e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1325 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1276 >seq626895 Length=1048 Score = 84.2 bits (92), Expect = 1e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 11477 CTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1048 CTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 996 >seq507183 Length=209 Score = 84.2 bits (92), Expect = 1e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 50 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 259081487090500