Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq736048 122 8e-23 seq702768 118 9e-22 seq750760 107 2e-18 seq689433 100 3e-16 seq754749 93.3 4e-14 seq726932 93.3 4e-14 seq109077 84.2 2e-11 >seq736048 Length=1016 Score = 122 bits (134), Expect = 8e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| || || | |||||||| | || || || || || | Sbjct 624 AAAAATTTGCATGCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGAT 683 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||||||||| || || | |||||| ||||| || || |||| || | || || Sbjct 684 GTTATAATCAGCCAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTG 743 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| ||||| |||||||| || ||||| | |||||||| ||||| | | ||||| Sbjct 744 CTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTTGCTTTGACATTATCAATGGTGTC 803 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| ||||| ||||||||||| || || |||||||| || ||||| Sbjct 804 TGAGCTCTCAACTTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 863 Query 95008 GC 95009 || Sbjct 864 GC 865 Score = 118 bits (130), Expect = 9e-22 Identities = 187/265 (71%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| | ||| ||| || |||| ||| || || |||||||| || | |||||||| Sbjct 375 TTTACCAGTAAGGGTCTTCACAAATATTTGCATGCCACCTCTCAAACGGAGAACCAAGTG 434 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGT 94864 | ||||||||||| || | ||| || || || ||| || ||| ||||||||| Sbjct 435 AAGGGTAGATTCCTTCTGGATGTTGTAGTCCGCCAA--TGTCCGACCATCTTCCAGCTGT 492 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || || |||| || | || ||||| ||||| |||||||| || ||||| | ||||| Sbjct 493 TTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTA 552 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 || || || ||| ||||| | || || |||| || || ||||||||||| Sbjct 553 GCTTTCACATTATCGATGGTGTCTGAACTCTCAACTTCAAGGGTAATAGTTTTTCCAGTG 612 Query 94985 AGAGTTTTCACAAAGATCTGCATGC 95009 || || |||||||| || ||||||| Sbjct 613 AGGGTCTTCACAAAAATTTGCATGC 637 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||||||||| ||||||| | || || || || |||||||| ||||| || Sbjct 24 ATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTT 83 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||||||||||||| | | | ||||| | | || || |||| ||||| Sbjct 84 GTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCAAGAGTGAT 143 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | || |||||||| |||||||| Sbjct 144 TGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 179 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || || ||||||||| || ||||| || || ||||||||||| || Sbjct 252 ATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTT 311 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||||| || || | ||| ||||| | || || |||| ||||| Sbjct 312 GTCCTGGATTTTTGCTTTCACATTGTCGATGGTGTCTGAACTCTCAACCTCAAGGGTGAT 371 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| |||||||| || |||||||| || ||||||| Sbjct 372 AGTTTTACCAGTAAGGGTCTTCACAAATATTTGCATGC 409 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||||| || | |||||||| | || || ||||| || | Sbjct 852 AAAAATTTGCATGCCACCTCTCAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGAT 911 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||||||||| || || | |||||||||||| || || ||||||| | || || Sbjct 912 GTTATAATCAGCCAATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTG 971 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 ||| |||||||||||||| || ||||| | || |||||||| || Sbjct 972 CTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTTTGCCTTCAC 1016 >seq702768 Length=508 Score = 118 bits (130), Expect = 9e-22 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | |||||| ||||| || | ||| ||||| || || || || ||||| Sbjct 309 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAG-CA-AGAGTCCGACCATCCT 252 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||| || || ||||||| | || |||||||||||||| || ||||| ||||| | Sbjct 251 CCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCT 192 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||||||||| || | | |||||| | | || || || | || || || | Sbjct 191 GAATTTTTGCCTTCACATTATCTATAGTGTCTGAGCTCTCAACCTCTAGTGTAATTGTCT 132 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || |||||||| |||||||| Sbjct 131 TTCCCGTCAGGGTCTTCACAAATATCTGCAT 101 >seq750760 Length=1299 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCT 94839 || ||||| | || | ||||||||| | ||||| ||||| || | ||| || || ||| Sbjct 361 CCACCTCTGAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCT 302 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | || | ||||| ||||| || ||| | || || | | |||||| || ||||| Sbjct 301 -AGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAGG 243 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| ||||| ||||| | || || ||||| || | ||| ||||||| | || || Sbjct 242 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGGACTCCAC 183 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| || || || || |||||||| ||||||||||| Sbjct 182 CTCAAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 135 >seq689433 Length=414 Score = 100 bits (110), Expect = 3e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||| || ||||| || | ||| ||||| || ||||| || ||||| Sbjct 230 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAG-CA-AGTGTCCGACCATCCT 173 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||| || || | ||||| | || |||||||||||||| || || || ||||| | Sbjct 172 CCAACTGCTTCCCTGCGAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCT 113 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| ||||| || | | || || | | || || || | ||||| || | Sbjct 112 GAATTTTGGCCTTCACATTATCTATGGTATCTGAGCTCTCCACCTCTAGTGTGATCGTCT 53 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || |||||||| |||||||| Sbjct 52 TTCCCGTCAGGGTCTTCACAAATATCTGCAT 22 >seq754749 Length=725 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || || |||||||| || || || ||||| || ||||| | ||||||||||| | Sbjct 723 CAAAAATCAACCTTTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTTTGCCTTAA 664 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | | || |||| || || |||| || ||||||||||||||||| || | Sbjct 663 CATTGTCAATGGTATCAGAACTCTCAACTTCAAGAGTTATGGTTTTTCCAGTAAGGGTCT 604 Query 94992 TCACAAAGATCTGCAT 95007 | |||||||||||||| Sbjct 603 TAACAAAGATCTGCAT 588 >seq726932 Length=530 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||||| ||| | || || ||||| || | ||| || ||| ||| ||| | ||| Sbjct 40 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC--TAGGGTTCGGCCGTCC 97 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||||||||| | ||||| | | ||||| || || || || ||||| ||||| Sbjct 98 TCCAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 157 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || |||||||| | ||| ||||||| || || || | || ||||| Sbjct 158 TGGATCTTAGCCTTGACATTGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTC 217 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||||| ||||||||||| Sbjct 218 TTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 249 >seq109077 Length=726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||||||| | ||||| || || || | ||| ||||| || || ||| | |||| Sbjct 211 CACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAG-CA-AGAGTTCGCCCATCC 268 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || ||||| || || | || || || || ||||| || || ||||| || || ||||| Sbjct 269 TCAAGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGGAATCCCCTCCTTGTCC 328 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| || || || || | ||| || || | | || || || | || || || Sbjct 329 TGAATCTTCGCTTTCACATTGTCGATGGTATCCGAGCTCTCAACCTCTAAGGTAATTGTC 388 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || ||||| | ||| ||||| ||||||||||||| Sbjct 389 TTGCCAGTTAAAGTCTTCACGAAGATCTGCATGC 422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444054147705000