Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq648083 131 3e-26 seq613504 129 9e-26 seq652827 107 3e-19 seq719049 105 1e-18 seq683269 104 4e-18 seq645727 96.9 5e-16 >seq648083 Length=1867 Score = 131 bits (144), Expect = 3e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | || || ||||||||||| || ||||| |||||||| || Sbjct 1157 GCAAAGCGACATCGTAAGGTGCTCCGTGATAACATCCAGGGTATCACGAAGCCAGCCATT 1216 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||| | |||||| | | || || || |||||| || || || ||||||| |||| Sbjct 1217 CGTAGGCTGGCTAGGAGAGGAGGTGTGAAGCGTATCAGCGGTCTGATCTATGAGGAGACC 1276 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||||||||| | ||| ||| || | || || || ||| || ||| Sbjct 1277 CGTGGTGTGCTGAAGATCTTCTTGGAGAACGTCATTCGGGACGCCGTCACCTACACGGAG 1336 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || || ||||||| |||||||||| | || | || ||| Sbjct 1337 CACGCTCGCCGGAAGACCGTGACTGCCATGGACGTCGTCTATGCTCTCAAGAGGCAGGGC 1396 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| ||||| ||||| Sbjct 1397 AGGACTCTGTATGGGTTTGGTGGTTAA 1423 >seq613504 Length=1020 Score = 129 bits (142), Expect = 9e-26 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||| || |||||||| || |||||||| ||||| |||||| Sbjct 603 GCGAAGCGTCATCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACTAAGCCGGCTATC 662 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || ||||| ||| | || ||| ||| |||| || |||| Sbjct 663 CGACGTCTTGCGAGAAGAGGCGGAGTGAAGAGAATCAGTGGGTTGATCTACGAGGAGACC 722 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||||| ||| | ||| |||||| | |||||| | || || ||| Sbjct 723 AGAGGCGTTTTGAAGATATTCTTGGAGAACGTTATTCGCGATGCTGTGACGTACACTGAG 782 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||| | || ||||| || ||| |||||||| | || || || Sbjct 783 CACGCCAGGCGGAAGACGGTGACCGCCATGGATGTTGTTTACGC 826 >seq652827 Length=8540 Score = 107 bits (118), Expect = 3e-19 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| | || || || ||||||||||| || ||||||||||| || || Sbjct 4744 GCCAAGCGTCATCGCAAGGTC-CTCCGTGATAACATCCAGGGCATCACCAAGCCTGCCAT 4686 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| | | || || || |||||| || || || |||| ||||| | Sbjct 4685 CAGGCGTCTGGCCAGAAGAGGAGGCGTGAAGCGTATCAGCGGTCTGATCTACGAAGAAAC 4626 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||||||||||| ||| ||||||| || ||| | ||| || || Sbjct 4625 CAGAGGGGTGCTCAAGATCTTCCTTGAGAACGTTATCAGAGACGCTGTGACCTACACTGA 4566 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||||||| || ||||| || || | ||||| Sbjct 4565 GCACGCTCGTCGCAAGACCGTGACGGCTATGGA 4533 >seq719049 Length=2378 Score = 105 bits (116), Expect = 1e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||||||||| || || ||||||||||| ||||| |||||| |||| | | || Sbjct 579 CTCCGAGATAACATTCAGGGTATCACCAAGCCTGCTATTCGTCGTTTGGCGAGGAGAGGA 520 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || || | | ||||| |||| | | ||| | ||||| ||| Sbjct 519 GGCGTGAAGAGGATCAGCGGTCTCATTTATGAGGAGACCAGAGGCGTTCTCAAGATTTTC 460 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | |||||| | ||| || |||||||| | | | |||||||| Sbjct 459 CTCGAGAACGTGATTCGCGATGCTGTGACCTACACTGAGCACGCCAGAAGGAAGACTGTG 400 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| | |||||| | || ||||| Sbjct 399 ACCGCTATGGATGTTGTTTATGC 377 >seq683269 Length=779 Score = 104 bits (114), Expect = 4e-18 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | ||| || |||||||| || || ||||| ||||| || ||| Sbjct 591 GCAAAGCGTCATCGGAAGGTTCTCCGTGATAACATTCAGGGCATCACGAAGCCGGCGATC 650 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||| | | ||||| || ||| | || ||| ||| |||| || |||| Sbjct 651 CGGCGTCTGGCTAGAAGAGGTGGGGTGAAGAGAATCAGTGGGTTGATCTACGAGGAGACC 710 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| ||||||||||| | ||| ||| || | |||||| | || || ||| Sbjct 711 AGAGGCGTTCTGAAGATCTTCTTGGAGAACGTCATTCGCGATGCTGTGACTTACACTGAG 770 Query 16613 CACGCTA 16619 ||||||| Sbjct 771 CACGCTA 777 >seq645727 Length=2426 Score = 96.9 bits (106), Expect = 5e-16 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || ||||||||||| || || || || || || | | ||||| | Sbjct 1231 GAGATAACATTCAGGGTATCACCAAGCCTGCCATTCGCCGGCTTGCGAGAAGAGGTGGTG 1172 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || ||| || ||||||| || | | | ||| | ||||||||||| Sbjct 1171 TGAAGAGGATCAGTGGGCTGATCTATGAGGAAACCAGAGGGGTTCTTAAGATCTTCCTTG 1112 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||| | ||| || || || || | | | ||||| |||||| Sbjct 1111 AGAATGTGATTCGCGATGCCGTGACCTACACTGAACATGCGAGAAGGAAGACCGTCACCG 1052 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| | || | || || | | ||||||| ||||| ||| Sbjct 1051 CCATGGATGTGGTTTATGCTCTCAAGAGGCAGGGAAGGACCCTTTATGGATTTGGCGGTT 992 Query 16698 AAT 16700 ||| Sbjct 991 AAT 989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78383869619625