Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq516297 295 2e-75 seq551508 277 5e-70 seq545415 199 1e-46 seq616439 190 6e-44 seq717558 176 1e-39 seq161073 114 4e-21 seq493281 95.1 3e-15 seq711014 80.6 8e-11 seq455454 80.6 8e-11 >seq516297 Length=515 Score = 295 bits (326), Expect = 2e-75 Identities = 376/514 (73%), Gaps = 3/514 (1%) Strand=Plus/Minus Query 19748 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 19807 ||||||||||||||| || |||||||||||||| ||||| ||| | |||||| | || || Sbjct 513 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCTGA 454 Query 19808 ACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATC 19867 ||||| ||||||||||| | ||||||||| | || | | ||| ||||| ||||| || Sbjct 453 GCACAACATCCTTATGCACTCATTCCACATGTT-GGCATAGTTGGTGTATTTGGTGGTTC 395 Query 19868 TCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGA 19927 || ||| || |||||| || ||||| || || | || | |||||| | || Sbjct 394 CCTATTCAGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATAGA 335 Query 19928 GGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGT 19987 ||| ||| ||| || || | |||| ||||||||||| || ||||||||| Sbjct 334 AAATGAATCTGCGAATGTAGGTTACACATTCGATCAAGATGAAGAAACTTATAATATTAC 275 Query 19988 CGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCG 20047 ||||| || || || | ||| ||||||| || ||||||||| |||||||||||||| Sbjct 274 GGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTCTCG 215 Query 20048 TTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGG 20107 ||||||||||||||| || | | ||| || | || || || ||| | | | | || Sbjct 214 TTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTTAGG 155 Query 20108 AATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-G 20166 ||| |||| || ||||| |||| |||||||| || || ||||| || |||||||| | Sbjct 154 TATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGATAG 95 Query 20167 TCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTG 20226 |||| || |||| || | ||||||| | ||||| | |||||||| || | | Sbjct 94 TCAA-GGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGTATGG 36 Query 20227 AAGTTATGCACGAGCGCAATGCTCATAACTTCCC 20260 |||||||||| || || ||||||||||| ||||| Sbjct 35 AAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq551508 Length=510 Score = 277 bits (306), Expect = 5e-70 Identities = 342/465 (74%), Gaps = 2/465 (0%) Strand=Plus/Plus Query 19630 AGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCAC 19689 |||||||||| || | | | | ||| | || ||||| | || |||||| |||| | Sbjct 31 AGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGTTGCATATTCAGCTC 90 Query 19690 CACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGT 19748 | | |||| ||| |||| | ||||| | | |||||| |||| ||||| || ||| | Sbjct 91 CTGTTGCAGCTGCTACTGCTAT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTAT 149 Query 19749 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 19808 |||||||||||||| | |||||||||||||| ||||| ||| | |||||||| | || Sbjct 150 GATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGTTGAG 209 Query 19809 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCT 19868 ||||| ||||||||||| || ||||||||| | | ||| ||||| |||||||| || || Sbjct 210 CACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGTATTCGGCGGTTCC 269 Query 19869 CTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAG 19928 || ||| |||||||| || ||||| || || | || | |||||| || | Sbjct 270 CTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAGGGAAACCACAAAA 329 Query 19929 GATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTC 19988 ||| ||| || || || || ||||| ||||| ||||| || ||||||||||| Sbjct 330 AATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAACTTATAATATTGTG 389 Query 19989 GCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGT 20048 ||||| | || || ||||| |||||||||| ||||||||| |||||||||||| || Sbjct 390 GCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTTCAATAATTCATGT 449 Query 20049 TCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGG 20093 |||||| ||||||| || ||| ||| || || || || || ||| Sbjct 450 TCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 494 >seq545415 Length=298 Score = 199 bits (220), Expect = 1e-46 Identities = 223/298 (75%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015 ||||| ||||| ||||| || ||||||||||| ||||| || || || ||||| ||||| Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTC 20075 || || |||||||| |||| ||||||||||||||||||||||||| | ||| ||| Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 20076 CCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAAT 20135 | || || || || ||| | | | | || ||| |||||||| |||||||||| ||| Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 20136 GGTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCT 20195 ||||| || |||||||| || |||||||| | | || |||| || |||||| Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGGCT 240 Query 20196 GATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATA 20253 ||| | | || | |||||||| || | ||||||||||| || | |||||||||| Sbjct 241 GATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCATA 298 >seq616439 Length=1776 Score = 190 bits (210), Expect = 6e-44 Identities = 231/315 (73%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 19748 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 19807 ||||| ||||||| | || |||||| ||||||| ||||| ||| | |||||| | | || Sbjct 190 TGATGATATGCCTTTAGGAATCTCTAGTACTTTCAACTTCATGATTGTATTCTAGGTTGA 249 Query 19808 ACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATC 19867 ||||| ||||||||||| | |||||| || | ||||| | ||| ||||| | || || Sbjct 250 GCACAACATCCTTATGCACCTATTCCACTTGTTAGGTGTAGTTGGTGTATTTGATGAGTC 309 Query 19868 TCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGA 19927 | | ||| || |||||| || ||||| || | | ||||||||||| || | Sbjct 310 TTTATTCAATGTTATGCATGGTTTCTTGGTAACCTTTAGTTTGATCAAGGAAACCACAAA 369 Query 19928 GGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGT 19987 ||| || || || || || || |||| ||||||||||| || |||||||| || Sbjct 370 AAATGAATTTGTTAATTAAGGTTACAAATTCGATCAAGATGAAGAAACTTATAATATCGT 429 Query 19988 CGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCG 20047 | ||| || || || ||| | ||||||| |||||||||| | ||| ||| |||||| Sbjct 430 AGTTGCTCATGGTTATTTTAGTCGATTGATTTTTCAATATGGTAGTTTGGATATTTCTCG 489 Query 20048 TTCTTTACATTTCTT 20062 ||||||||||||||| Sbjct 490 TTCTTTACATTTCTT 504 >seq717558 Length=1667 Score = 176 bits (194), Expect = 1e-39 Identities = 308/443 (70%), Gaps = 9/443 (2%) Strand=Plus/Plus Query 19724 CCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAA 19783 |||| |||| || | | |||| | ||||| ||||||| | || || |||||||| Sbjct 1008 CCCAATTGGTTAAAGAAATTTTTTTAATGGTTTGCCTCTAGTAATTAGTGCCACTTTTAA 1067 Query 19784 CTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGG 19843 ||| ||| | |||||| ||||| || ||| ||||||||||| | ||||||||| ||| Sbjct 1068 CTTCATGATTGTATTCTAAGCAAAATGCAACATCCTTATGCACTCATTCCACATGTTCGT 1127 Query 19844 TGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTC 19903 ||| ||| ||||||| || || | || || |||||| || |||||| || | Sbjct 1128 TGTACTTGGTATATTCGGAGGTTCCCCATTTAATGTTATGCATGGTTCTTTGGTAACCTT 1187 Query 19904 CTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCA 19963 | || | || ||| || | ||| || | || | || || | || || || Sbjct 1188 TAGTTTGAT-AGGGTAACCACAAAAAATGAATATCCTAATGAAGGTTAAATATTTGGTCA 1246 Query 19964 AGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCA 20023 ||| ||||| || |||| |||||| | || | || || ||||| ||||| | | || Sbjct 1247 AGAGGAAGAAACTTATACTATTGTGGTTGATTATGGTTATTTTGGCCGATTGGT-TACCA 1305 Query 20024 ATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTT----TCTTGCTACTTTCCCCG 20079 ||||||| |||||||||||| | || |||||||||||| || ||||||| | | Sbjct 1306 ATATGCTAGTTTCAATAATTCACATTTTTTACATTTCTTCCCAGCTAGCTACTTGGACTG 1365 Query 20080 TGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTT 20139 | || || || | | | || | | || ||| ||||||||||||||||||| ||||||| Sbjct 1366 TAGTAGGTATCTAGTTCACTACTTTAGGCATCAGCACTATGGCTTTCAACCTAAATGGTT 1425 Query 20140 TTAACTTTAACCAGTCAGTAGTT 20162 | || ||| | || ||||||| Sbjct 1426 TCAA--TTAGCATGT-AGTAGTT 1445 >seq161073 Length=246 Score = 114 bits (126), Expect = 4e-21 Identities = 173/241 (72%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 19548 GATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGA 19607 ||||| ||||||||||| || || || ||| | || |||| | |||| |||| | || Sbjct 6 GATGAATGGTTATACAATGGTGGCCCTTATGAGCTAATTGTTCTACACTACTTACTTGGT 65 Query 19608 GTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCA-TG 19666 ||||| ||| ||| | ||| |||||| || | |||| ||| |||| || Sbjct 66 GTAGCTTTTTACATGGGTCGTGAGTAGGAACTTAGTTTCCATCTAGGTATG-CACCATTG 124 Query 19667 GATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACC 19725 ||| | || |||||| ||| || | |||| || |||||| ||||| | | |||| Sbjct 125 GATTGTTGTTGCATATTTAGCTCCTATTGCAGCTACTACTGCTGT-TTTCTTGATCTACC 183 Query 19726 CATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACT 19785 || |||| |||| || ||| ||||||||||||||| || |||||||||||||| |||| Sbjct 184 CAATTGGTTAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACT 243 Query 19786 T 19786 | Sbjct 244 T 244 >seq493281 Length=200 Score = 95.1 bits (104), Expect = 3e-15 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 19433 TGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCC 19492 ||| || ||||| || || || | || |||||||||||||| ||||| || | |||| Sbjct 200 TGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCC 141 Query 19493 AAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGA 19552 | || || ||||| |||||||||| || || | |||||| | | ||||| Sbjct 140 TACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATGA 81 Query 19553 GTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGC 19612 ||||||||||| || ||||| ||| | || |||| | ||||||||| | || ||||| Sbjct 80 ATGGTTATACAATGGTGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 21 >seq711014 Length=229 Score = 80.6 bits (88), Expect = 8e-11 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19760 TCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCT 19819 ||| || ||||||||||| || ||||| || | |||||||| || || ||||| ||||| Sbjct 145 TCTAGGAATCTCTGGTACCTTCAACTTCATTATTGTATTCCAGGCTGAGCACAACATCCT 204 Query 19820 TATGCATCCGTTCCACATG 19838 |||||| || ||||||||| Sbjct 205 TATGCACCCATTCCACATG 223 >seq455454 Length=251 Score = 80.6 bits (88), Expect = 8e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 19794 GTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGC 19853 |||||||| || || ||||| ||||||||||| || ||||||||| | || | | ||| Sbjct 4 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCTTAGTTGGT 63 Query 19854 GTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTT 19902 ||||||| || || || ||| || ||||||||| ||||| |||| Sbjct 64 GTATTCGACGGTTCCCTATTCAGTGTTATGCACGGTTCCTTGGTAACTT 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143144661130500