Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq516297 223 6e-53 seq551508 214 3e-50 seq545415 159 6e-34 seq616439 131 3e-25 seq753951 100 5e-16 seq666543 95.1 2e-14 seq635339 93.3 7e-14 seq493281 93.3 7e-14 seq212858 89.7 8e-13 >seq516297 Length=515 Score = 223 bits (246), Expect = 6e-53 Identities = 359/515 (70%), Gaps = 1/515 (0%) Strand=Plus/Minus Query 212026 TCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCA 212085 || || ||||||||| |||| || || || || |||||||||||| | |||||| | || Sbjct 515 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCT 456 Query 212086 GAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGA 212145 || || ||||||||||||||| ||||||| ||| || | | ||| | || ||||| Sbjct 455 GAGCACAACATCCTTATGCACTCATTCCACATGTT-GGCATAGTTGGTGTATTTGGTGGT 397 Query 212146 GCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACT 212205 | ||||| || |||||| ||||| | || || ||| | || | ||||||| Sbjct 396 TCCCTATTCAGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATA 337 Query 212206 GGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATC 212265 | || || ||| ||||||| |||| ||||| ||||| || ||||| || Sbjct 336 GAAAATGAATCTGCGAATGTAGGTTACACATTCGATCAAGATGAAGAAACTTATAATATT 277 Query 212266 GTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGC 212325 ||||| ||||| || | ||| || | || ||||| ||||| |||||| || Sbjct 276 ACGGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTCT 217 Query 212326 AGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATG 212385 | |||||| |||||||| | | |||||| | | || | ||||| | || | Sbjct 216 CGTTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTTA 157 Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 |||||| ||| || | ||| |||||||||| ||||| ||||||||||| | |||||| Sbjct 156 GGTATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGAT 97 Query 212446 GCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATG 212505 |||| || || ||||| || |||| || | || | || |||||||||||| Sbjct 96 AGTCAAGGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGTATG 37 Query 212506 GAAGTTATGCACGAAAGAAATGCACACAACTTCCC 212540 ||||||||||| ||| | ||||| || || ||||| Sbjct 36 GAAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq551508 Length=510 Score = 214 bits (236), Expect = 3e-50 Identities = 343/493 (70%), Gaps = 0/493 (0%) Strand=Plus/Plus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 |||||||| | ||||||||||| | |||| | | |||||| |||||||| |||| Sbjct 18 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGTT 77 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 || |||||||| ||||| |||| ||| ||| | ||| | | |||||| | ||||| Sbjct 78 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAA 137 Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTA 212076 || || | || ||||||||| ||| || || || || |||||||||||| | ||| Sbjct 138 GGAAGCTTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGTA 197 Query 212077 TTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATG 212136 ||||| | || || ||||||||||||||||||||||| ||| || ||| || ||| | Sbjct 198 TTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGTA 257 Query 212137 TTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGT 212196 ||||| || | ||||| |||||||| ||||| | || || ||| | || | Sbjct 258 TTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAGG 317 Query 212197 GAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACA 212256 |||||||| || || || |||||||| ||||| ||||| ||||| || Sbjct 318 GAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAACT 377 Query 212257 TATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTC 212316 ||||| || || ||||| | || || || || || | || ||||| ||||| ||| Sbjct 378 TATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTTC 437 Query 212317 AACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTA 212376 || || | |||| | |||||||| || | |||||||| | || | ||||| Sbjct 438 AATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 497 Query 212377 ACCTCTATGGGTA 212389 || || | |||| Sbjct 498 ACTGCTTTAGGTA 510 >seq545415 Length=298 Score = 159 bits (176), Expect = 6e-34 Identities = 213/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 212236 TTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTT 212295 ||||| ||||| ||||| || ||||| || || ||||| ||||| || || || || | Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 212296 ATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGG 212355 |||||| | ||||| ||| | || | |||||| |||||| | || | ||| Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 212356 CCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAAT 212415 | ||| | || | ||||| | || | |||||| |||| ||| | |||||||||||| Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 212416 GGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGT 212475 || ||||| || |||||||| | |||||| |||| || || |||||||| | Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGGCT 240 Query 212476 GATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACA 212531 ||| || | ||| | || ||||||||||||||||||||||| ||| | ||||| || Sbjct 241 GATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 296 >seq616439 Length=1776 Score = 131 bits (144), Expect = 3e-25 Identities = 204/288 (71%), Gaps = 4/288 (1%) Strand=Plus/Plus Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 |||| || | |||||||||||| || || | || |||||||||||| | |||||| | Sbjct 185 TTCTATGATGATATGCCTTTAGGAATCTCTAGTACTTTCAACTTCATGATTGTATTCTAG 244 Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGT 212142 | || || |||||||||||||||| |||||| || |||||| | ||| | || | | Sbjct 245 GTTGAGCACAACATCCTTATGCACCTATTCCACTTGTTAGGTGTAGTTGGTGTATTTGAT 304 Query 212143 GGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTT--ATCCGTGAAA 212200 | | |||||| || |||||| |||| ||||| || | ||| | || ||| |||| Sbjct 305 GAGTCTTTATTCAATGTTATGCATGGTT-TCTTGGTA-ACCTTTAGTTTGATCAAGGAAA 362 Query 212201 CCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATA 212260 |||| || | || || |||||||| |||| ||||| ||||| || |||| Sbjct 363 CCACAAAAAATGAATTTGTTAATTAAGGTTACAAATTCGATCAAGATGAAGAAACTTATA 422 Query 212261 ACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATG 212308 | ||||| | ||| ||||| || || || || | || || || |||| Sbjct 423 ATATCGTAGTTGCTCATGGTTATTTTAGTCGATTGATTTTTCAATATG 470 >seq753951 Length=5828 Score = 100 bits (110), Expect = 5e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| || || ||| ||||||||||||||| |||| | |||||| | | Sbjct 1779 AGTGGGAACTTAGATTTTGTCTAGATATGCGTCCTTGGATTGTTGTTACATATTCAACTC 1720 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 ||| || || | | ||| ||| | | ||| | ||||||| | || || Sbjct 1719 TTGTTGTAGTTACTATTGTTGTTTTCTTGATCAACCTAATCGGTCAATGAAACTTTTCTA 1660 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | |||||| || |||| | || || || |||||||||||| | |||||||| || || Sbjct 1659 ATGGTATGTCTCTAGGACTTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGT 1600 Query 212090 ATAACATCCTTATGCACCCATTCCA 212114 | | ||| | ||||||||||||||| Sbjct 1599 ACATCATTCCTATGCACCCATTCCA 1575 >seq666543 Length=3475 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| || || ||||| || |||||||| ||| || ||||||| | | | ||||||| || Sbjct 2108 GTTTGCATTTTTATCCAATATGGGAAGCCGCATCTGTTGATGAATAGTTATACAATGATG 2167 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCAT---ACATGGGAA 211906 ||||||| || | | || | |||||| |||| | | | ||| | ||||||| Sbjct 2168 GTCCTTATAAGCTAATTGTCCTACACTTC-TTATTT-AGTGT-AGCTTGTTACATGGGTC 2224 Query 211907 GACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAG 211966 | ||||||||||| | || ||| |||||||| | || ||| |||| | ||||||| Sbjct 2225 GTGAGTGGGAACTTAGTTTCCATTTGGGTATGCGCCTTTAGATTGTTGTTACATATTCAG 2284 Query 211967 CACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGG 212018 | |||| |||| || | ||| ||| | | |||||| | ||||| || Sbjct 2285 CTTCTGTTACAGCTACTACTGTTGTTTTCTTGATCTACCCAATTGGTCAAGG 2336 >seq635339 Length=4828 Score = 93.3 bits (102), Expect = 7e-14 Identities = 219/331 (66%), Gaps = 0/331 (0%) Strand=Plus/Minus Query 193831 CTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGT 193890 |||| | ||| |||||| | |||||||| || || || ||||| | | | || | Sbjct 3292 CTCCCCAATCGGAAACCTCTCCATTTCACCCCCGATCCCCTTACGCGGCCTCTAAATGCG 3233 Query 193891 ATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTA 193950 | | ||||| || | ||| || || || | || || || ||| | ||| | Sbjct 3232 CCGCTCATTGGTACACCGTGAACTACCGAGAAGCCTACGGGCTCTTCGCCTGCAATGGGA 3173 Query 193951 TTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACAC 194010 |||| |||||||||||||| ||| | | ||||||| || || || || |||||||||| Sbjct 3172 TTCTGTTCAATCACGAATCCCCACGGCGGGGTGAGAATTTCGTGACGCGAAAGATTACAC 3113 Query 194011 AAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATG 194070 || | | |||| |||| || |||| | || | | || ||| | | | Sbjct 3112 GAGCCGTGGGGAGGATCAAGATTGGGTTGCAGAGCAAACTGTTCATGGGGAATTTGCAGG 3053 Query 194071 CTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAAC 194130 || ||| |||||||| ||| ||| || || |||||||||||| | ||| |||| | Sbjct 3052 CTTCGAGAGATTGGGGTTTCGCGGGGGACTACGTGGAAGCGATGTGGATGATGCTGCAGC 2993 Query 194131 AGGATGAACCCGATGATTATGTGATTGCTAC 194161 |||| | || || ||||| ||| | || || Sbjct 2992 AGGAGAAGCCGGACGATTACGTGGTGGCGAC 2962 >seq493281 Length=200 Score = 93.3 bits (102), Expect = 7e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 211713 TGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCC 211772 |||||| || |||| || | | ||||| ||||| || ||||||||||| | |||| Sbjct 200 TGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCC 141 Query 211773 ATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 211832 |||| || || ||||| ||||| || || || | ||||||| || | ||||||| Sbjct 140 TACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATGA 81 Query 211833 GTGGCTCTACAATGGTGGTCCTTA 211856 ||| | ||||||||||||||||| Sbjct 80 ATGGTTATACAATGGTGGTCCTTA 57 >seq212858 Length=258 Score = 89.7 bits (98), Expect = 8e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 212419 TTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGAT 212478 ||||| ||||||||||| || |||||| |||| || || ||||||| |||| Sbjct 258 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGACTGAT 199 Query 212479 GTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTC 212538 || | ||| | || |||||||||||| |||||||||| ||| | ||||| || || ||| Sbjct 198 ATTATCAACCGTGCTAACCTTGGTATGAAAGTTATGCATGAACGTAATGCTCATAATTTC 139 Query 212539 CCACTTGACTTAGC 212552 || || || |||| Sbjct 138 CCTCTAGATCTAGC 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 799922541555000