Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq516297 244 1e-59 seq551508 235 6e-57 seq545415 168 8e-37 seq616439 140 4e-28 seq541212 96.9 4e-15 seq141858 93.3 5e-14 seq493281 89.7 6e-13 seq161073 89.7 6e-13 seq345357 87.8 2e-12 >seq516297 Length=515 Score = 244 bits (270), Expect = 1e-59 Identities = 370/521 (71%), Gaps = 13/521 (2%) Strand=Plus/Minus Query 171122 TCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCA 171181 |||||||||||||| ||||| ||||| ||||| |||||||||||| | || ||| | || Sbjct 515 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCT 456 Query 171182 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT 171241 || |||||||| || |||||| | ||||| ||| || ||| ||| | || |||||| Sbjct 455 GAGCACAACATCCTTATGCACTCATTCCACATGTT-GGCATAGTTGGTGTATTTGGTGGT 397 Query 171242 AGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACT 171301 || ||||||| ||||| ||||| | || || ||| | | || || || || | Sbjct 396 TCCCTATTCAGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATA 337 Query 171302 GAGAACGAGAGT-CAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACAT 171360 || || || | | || || || || | |||| ||||| |||||||| ||||| || Sbjct 336 GAAAATGAATCTGCGAATGTA-GGTTACACATTCGATCAAGATGAAGAAACTTATAATAT 278 Query 171361 TGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTC 171420 | ||||||||||| || | ||| |||| || ||||| ||||| |||||| || || Sbjct 277 TACGGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTC 218 Query 171421 TCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTAT 171480 |||||| ||||| |||||||| | || | ||| |||| || | ||||| | || | Sbjct 217 TCGTTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTT 158 Query 171481 GGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGA 171540 |||||| || || | ||| |||| || || ||||| ||||||||||| | ||| Sbjct 157 AGGTATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATC---TATAGT 101 Query 171541 TGCAAACGGAAAGATTGTACCA-----ACATGGGGAGATGTTCTTAACAGAGCAAACCTT 171595 || | | ||| |||| | || | || ||| || | || | || |||||| Sbjct 100 TG--ATAGTCAAGGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTT 43 Query 171596 GGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCC 171636 || |||||||||||||||||| | ||||| || || ||||| Sbjct 42 GGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq551508 Length=510 Score = 235 bits (260), Expect = 6e-57 Identities = 348/493 (71%), Gaps = 0/493 (0%) Strand=Plus/Plus Query 170993 TACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTA 171052 ||||||||| | |||||||||| | | | || | ||| | |||||||| ||| Sbjct 18 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGTT 77 Query 171053 GCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAG 171112 ||||| ||||| ||||| | || || ||| | ||| | | || ||| | ||||| Sbjct 78 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAA 137 Query 171113 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTG 171172 || || | |||||||||||| |||| ||||| ||||| |||||||||||| | || Sbjct 138 GGAAGCTTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGTA 197 Query 171173 TTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATG 171232 ||||| | || |||||||| || |||||||| ||||| ||| || |||||| ||| | Sbjct 198 TTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGTA 257 Query 171233 TTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGA 171292 ||||| ||| || ||||| || ||||| ||||| | || || ||| | | || || Sbjct 258 TTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAGG 317 Query 171293 GAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACA 171352 || || || | || || | || || || || ||||| ||||| |||||||| Sbjct 318 GAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAACT 377 Query 171353 TATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTC 171412 ||||| ||||| ||||||| || || || || |||| || ||||| ||||| ||| Sbjct 378 TATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTTC 437 Query 171413 AACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTA 171472 || || || |||| ||| | |||||||| |||| | |||||||| || | ||||| Sbjct 438 AATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 497 Query 171473 ACCTCTATGGGTA 171485 || || | |||| Sbjct 498 ACTGCTTTAGGTA 510 >seq545415 Length=298 Score = 168 bits (186), Expect = 8e-37 Identities = 217/297 (73%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 171332 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 171391 ||||| ||||| |||||||| ||||| ||||| ||||||||||| || || || |||| Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 171392 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTC 171451 |||||| | ||||| ||| | || |||||||| ||||| |||||| | |||| | Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 171452 CCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAAC 171511 | |||||| || | ||||| | || | |||||| | || ||| | |||||||| || Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 171512 GGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGG 171570 || ||||| || |||||||| | || ||| || || || | | || |||| Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAA-GGTCGTGTAATTAATACTTGGGC 239 Query 171571 AGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 171627 ||| || | ||| | || |||||||| |||||||||||||||||| | ||||| || Sbjct 240 TGATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 296 >seq616439 Length=1776 Score = 140 bits (154), Expect = 4e-28 Identities = 238/343 (69%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 |||| ||||| |||||| |||| ||||| |||| |||||||||||| | || ||| | Sbjct 185 TTCTATGATGATATGCCTTTAGGAATCTCTAGTACTTTCAACTTCATGATTGTATTCTAG 244 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 171238 | || |||||||| || ||||||| ||||| || |||||||| ||| | || | | Sbjct 245 GTTGAGCACAACATCCTTATGCACCTATTCCACTTGTTAGGTGTAGTTGGTGTATTTGAT 304 Query 171239 GGTAGTC--TCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGA 171296 | |||| | |||| || ||||| |||| | || || | | | | |||| || | Sbjct 305 G--AGTCTTTATTCAATGTTATGCATGGTTTCTTGGTAACCTTTAGTTTGATCAAGGAAA 362 Query 171297 CAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATA 171356 | || | || || | || || || || || |||| ||||| |||||||| |||| Sbjct 363 CCACAAAAAATGAATTTGTTAATTAAGGTTACAAATTCGATCAAGATGAAGAAACTTATA 422 Query 171357 ACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACA 171416 | || || | ||||||||| || || || |||| || || || |||| || | | Sbjct 423 ATATCGTAGTTGCTCATGGTTATTTTAGTCGATTGATTTTTCAATATGGTAGTTTGGATA 482 Query 171417 ACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGT 171459 |||||||| ||||| |||||| | | ||| | | |||||| Sbjct 483 TTTCTCGTTCTTTACATTTCTTCATAGTTGTTTGGCATGTAGT 525 >seq541212 Length=444 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 172018 TATTGTTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTG 172077 ||||||| |||||||| ||||| |||||||||||| || || ||| ||||||||||| Sbjct 437 TATTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGCATCAATTAGGTG 378 Query 172078 GACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 172130 | || |||| ||||| || | ||| | | || ||||| |||||||||||| Sbjct 377 GTCTGTGGACTTTTGTTGCTCTTCATTGTGCTTTCGGACTAATAGGTTTCATG 325 >seq141858 Length=237 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171861 CTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACC 171920 || || |||||||| || | || | || ||||||||| | | || || || || || Sbjct 236 CTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAAGTACAACCTTTGTAACT 177 Query 171921 TCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCA 171980 |||||||| || ||||| | || || ||| | || || || || ||||| | Sbjct 176 TCATGGTATACCCATGGATTGGCTAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCACC 117 Query 171981 GCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAG 172040 ||||| | || ||| | || | | | ||| | ||||||| ||||||| | ||| Sbjct 116 GCAGTTTATACCCCTACTAATAGTTTAGCACATTCTTTATTGTTATTATGGGGTCTTGAA 57 Query 172041 GCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGC 172096 | |||||||||| || || |||| |||||||||||| || |||| ||||| || Sbjct 56 GGACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGC 1 >seq493281 Length=200 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 170810 GAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCA 170869 ||||| ||| | || ||| | | ||||| ||||| || ||||||||||| | |||| Sbjct 199 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCCT 140 Query 170870 TCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAG 170929 |||| || ||||| || ||||| || || || | ||||||| | | | || || Sbjct 139 ACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATGAA 80 Query 170930 TGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCT 170989 ||||| ||||| || |||||||| || || || || | |||||| | |||| | || Sbjct 79 TGGTTATACAATGGTGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 20 Query 170990 GCCTACATGGGT 171001 ||||||||| Sbjct 19 TGTTACATGGGT 8 >seq161073 Length=246 Score = 89.7 bits (98), Expect = 6e-13 Identities = 168/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 170924 GACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGA 170983 || || ||||| ||||| || || ||||| || || || || | |||| | | |||| Sbjct 6 GATGAATGGTTATACAATGGTGGCCCTTATGAGCTAATTGTTCTACACTACTTACTTGGT 65 Query 170984 ATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGG 171043 | || ||||||||| | ||| |||||| | | ||||| ||| | |||| Sbjct 66 GTAGCTTTTTACATGGGTCGTGAGTAGGAACTTAGTTTCCATCTAGGTATGCACCATTGG 125 Query 171044 ATATGTGTAGCATACTCAGCACCTGTATCTGCAGC-ATT--TGCAGTATTCCTTGTGTAT 171100 || ||| ||||| | ||| ||| | |||||| | | ||| || ||| | | || Sbjct 126 ATTGTTGTTGCATATTTAGCTCCTAT---TGCAGCTACTACTGCTGTTTTCTTGATCTAC 182 Query 171101 CCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAAC 171160 ||| | ||| | || || |||||||||||||| ||||| ||||| ||||| |||||| Sbjct 183 CCAATTGGTTAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAAC 242 Query 171161 TTCA 171164 |||| Sbjct 243 TTCA 246 >seq345357 Length=322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 172224 CTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCA 172283 ||||| |||||| |||||||| | |||||||||| | ||| |||||| | ||| | Sbjct 236 CTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGTGCCTAGTTTTGGTATAGCATCT 177 Query 172284 ATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCAT 172343 || ||| | | || | || | || || || || ||| || | || ||||||||| Sbjct 176 ATATTTTGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 117 Query 172344 ATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACA 172403 |||||||| || | ||| || | || | || | ||||| || || |||||||| || Sbjct 116 ATGATGGGAGTTGTCGGTGTATTGGGCGTTGCTCTGCTATGCGCTATTCATGGTGCTACC 57 Query 172404 GTACAGAACACATTGTATGAAGA 172426 || | || || || | |||||| Sbjct 56 GTTGAAAATACTTTATTTGAAGA 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564878868795000