Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq681135 179 5e-40 seq5092 84.2 3e-11 >seq681135 Length=1827 Score = 179 bits (198), Expect = 5e-40 Identities = 422/626 (67%), Gaps = 22/626 (4%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| || |||||||||||||| | |||||||||| |||| || || || || || Sbjct 565 CAAGCACGCGAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 624 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 | ||| ||||| || || || || || ||||| ||||| || ||| ||| || || Sbjct 625 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAA 684 Query 33420 GAAGATTCCTTCTACTGCAG-CAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGT 33475 |||||| ||||| || |||| | || || | || | || || | ||| || || Sbjct 685 GAAGATGCCTTCCAC-GCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 743 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 | ||||| ||||||| | ||| ||||| ||||| || || || || || | Sbjct 744 CG---ATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTG 800 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 | | |||||| |||||| || || ||| || | ||| | || | ||| ||||| | Sbjct 801 CGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 860 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 |||| || || || |||||||||||||| ||||||||||| ||||| | |||||||| Sbjct 861 ACATCTCAGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGG 920 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTG 33714 | ||| || || | || | | |||| || | |||||| || ||||||||| Sbjct 921 AGACCTGGACCTC-CTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATTCCGTCAGAA 979 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTTTAT 33772 || || || || || | | ||| | || || | || |||| |||||| || || | Sbjct 980 GCGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTG--AGGTT-T 1036 Query 33773 TCCAATCATTGA----TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 33828 ||| |||||| || | ||| | || ||||| || | |||||||| || ||| Sbjct 1037 TCC---CATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCC 1093 Query 33829 TCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTA 33888 || ||||| || ||||| | ||||| || || || || ||||| ||| || | | Sbjct 1094 TCGGCCTTCTTGTACATTTCCCAGACTGCAGGGTACTGAATCGGGAACATACAGAACCGA 1153 Query 33889 TTTGGATTTGGTGCAAGGATGGGTTC 33914 | ||| || || || || | ||| || Sbjct 1154 TCTGGGTTAGGAGCGAGCAAGGGCTC 1179 >seq5092 Length=1596 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | || || ||||| || || ||||| | ||| | || || | Sbjct 848 GTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 789 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | ||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 788 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 730 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| ||||| || | ||| | || |||| | ||||| | || | Sbjct 729 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGATAGGACCTCTCAAG 670 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 669 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCGGTCATAAATGAT 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617059375605000