Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq687655 109 1e-18 seq656108 100 7e-16 seq5092 95.1 3e-14 seq681135 86.0 2e-11 >seq687655 Length=739 Score = 109 bits (120), Expect = 1e-18 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | | ||| | | |||||||||||||| |||||||||||||| || Sbjct 260 CAGTTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCTGACATG 201 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||||||||| |||||||| |||||| ||| || || | || ||| | ||||||||| Sbjct 200 GGTCTTGGTGTGCCGTTTAACATTGCATCTTATGCGCTCTTAACGTGCATGATCGCTCAT 141 Query 111822 TTT 111824 || Sbjct 140 GTT 138 >seq656108 Length=2760 Score = 100 bits (110), Expect = 7e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| | | ||| ||| || || |||||||||||||| ||||||||||| Sbjct 1468 CAGTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATG 1409 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||||||||| || ||||| ||||| ||| || || | || ||| | || |||||| Sbjct 1408 GGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCAT 1349 Query 111822 TTT 111824 || Sbjct 1348 GTT 1346 >seq5092 Length=1596 Score = 95.1 bits (104), Expect = 3e-14 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || || || || | |||||| || ||| | |||||| |||| | Sbjct 1061 ATGAAAGATGATAGTATTGAAGGAATATATGACACTCTAAAGGAGTGTGCTGTTATCAGC 1120 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACAT 363740 ||| ||| || ||||||||||| || | || || |||||| ||||| | ||||| || Sbjct 1121 AAGTCTGCTGGAGGAATTGGTGTTTCTGTTCATAACATTCGTGCCACAGGA-AGTTATAT 1179 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| || || | |||| | || ||||| | ||||| ||||| || ||||| | | | Sbjct 1180 TCGTGGAACAAATGGGACA-TCCAATGGCATTGTTCCTATGCTACGGGTGTTCAATGACA 1238 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || || ||||| ||| | || || Sbjct 1239 CTGCCCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAGGG 1278 >seq681135 Length=1827 Score = 86.0 bits (94), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 || || ||||| || | ||||| || || |||||||| ||||| || ||| || Sbjct 729 TTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTC 670 Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602 || | || || |||||||| ||||| | | |||||||| |||| || ||||||||| Sbjct 669 TGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATGAG 610 Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 ||||| ||||| ||||| | || |||||| ||||| |||| || Sbjct 609 TTAATCTCGCGAGACGAGGGCTTACACTGCGATTTCGCGTGCTTGCTCTA 560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1290726903789750