Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq736048 89.7 4e-13 seq662336 87.8 2e-12 seq313781 84.2 2e-11 >seq736048 Length=1016 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||||||| | || ||| | ||||| ||| | Sbjct 863 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAAGTTGAGAGCTCA 804 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| ||| || ||||| || || || || || || || Sbjct 803 GACACCATTGATAATGTCAAAGCAAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 744 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || ||||| ||||| |||| | | | | | || |||||||| Sbjct 743 CAGAGGCTTATATTTGCTGGTAAGCAGCTCGAGGATGGCCGGA-CATTGGCTGATTATAA 685 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || ||||| || || |||| || || | | || ||||| || Sbjct 684 CATCCAGAAAGAGTCCACCCTTCACTTGGTTCTCCGTTTAAGAGGCGG 637 >seq662336 Length=3756 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||| ||||| |||||| |||||| | ||||| ||||| ||| Sbjct 166 GACAAGGAAGGCATTCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAACTGGAA 225 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | | | ||||||||||| |||||||| || ||| |||| | || || Sbjct 226 GATGGTCGCACTCTTGCAGATTATAACATCCAAAAAGAGTCCACACTTCACCTTGTTTTG 285 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || | || ||||| ||||| || Sbjct 286 AGGCTTAGGGGAGGAACTATGAT 308 >seq313781 Length=385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| | || ||||| | ||||||||| || | || ||| |||||| ||| Sbjct 2 ATCACCCTGGAGGTCGAAAGCTCCGACACCATTGACAACGTGAAAGCGAAGATTCAGGAC 61 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || ||||| || || || || || ||||||||||||| || ||||||||| || || ||| Sbjct 62 AAGGAAGGGATTCCACCAGACCAGCAGAGACTGATTTTCGCCGGCAAGCAGCTTGAGGAT 121 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | ||| | ||||| |||||||| || || ||||| | || || ||| Sbjct 122 GGGCGAACTCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTCCACTTGGTG 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425974022199375