Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq702768 134 9e-27 seq57477 114 9e-21 seq689433 111 1e-19 seq736048 109 4e-19 seq23363 96.9 2e-15 seq750760 95.1 8e-15 seq48361 86.0 4e-12 >seq702768 Length=508 Score = 134 bits (148), Expect = 9e-27 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| |||||||| |||||| ||||| |||||||||| | | || | || || Sbjct 309 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTCC 250 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || || || || ||||| || || | || ||||| | |||| ||||| |||||| | Sbjct 249 AACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGA 190 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 |||||| ||||||||| | | ||| ||| || ||||| |||| |||||| || || Sbjct 189 ATTTTTGCCTTCACATTATCTATAGTGTCTGAGCTCTCAACCTCTAGTGTAATTGTCTTT 130 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| ||| ||||| ||||||||||| Sbjct 129 CCCGTCAGGGTCTTCACAAATATCTGCAT 101 >seq57477 Length=594 Score = 114 bits (126), Expect = 9e-21 Identities = 81/93 (87%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||| ||||||||||||||||||||||||||| | || || |||||| | Sbjct 26 AAGCCCGTTCCTTTGGCTGTGGTTTCGCTAGATAGTAGACAAGGACAGTGGGAATCTCAT 85 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| ||||||||| |||||||||||||||| Sbjct 86 TAATCCATTCATGCGCATCACTAATTAGATGAC 118 >seq689433 Length=414 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||||||| |||||| ||||| |||||||||| | || | || || Sbjct 230 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACCATCCTCC 171 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || || || || || || || || | || ||||| | |||| || || |||||| | Sbjct 170 AACTGCTTCCCTGCGAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGA 111 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||||||||| | | |||||| || || || |||| ||| || || || Sbjct 110 ATTTTGGCCTTCACATTATCTATGGTATCTGAGCTCTCCACCTCTAGTGTGATCGTCTTT 51 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| ||| ||||| ||||||||||| Sbjct 50 CCCGTCAGGGTCTTCACAAATATCTGCAT 22 >seq736048 Length=1016 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||||||| | ||||| ||||| || ||||| || || ||||| || | | Sbjct 409 CCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGCC 468 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | ||||| || |||||||| || | || || || | ||| Sbjct 469 AATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGA 528 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| ||||| |||||||| | || || ||| ||| |||||| Sbjct 529 ATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAACT 588 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||||||||| || || | ||| ||||| || || |||||| Sbjct 589 TCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCATG 636 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || |||||||| |||| |||| || | || |||| || || || ||||| Sbjct 217 TCCTTCTGTATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAG 276 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 ||||| | || || |||| || | ||||| |||||| |||||| |||||||| Sbjct 277 ATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGATTTTTGCTTTCACATTG 336 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || ||| ||| ||||| || | || ||||||||||| || | ||| ||||| Sbjct 337 TCGATGGTGTCTGAACTCTCAACCTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACA 396 Query 38307 AATATCTGCATG 38318 ||||| |||||| Sbjct 397 AATATTTGCATG 408 >seq23363 Length=1166 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/93 (83%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCG 25955 ||||||| ||||||||||||||||||| ||| |||||| | || | || |||| || Sbjct 66 TAAGCCCATTCCCTTGGCTGTGGTTTCACTAAATAGTAAACAGGAACAGTGGGAATCCCG 125 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 ||||||| ||||||| |||||||||||||||| Sbjct 126 TTAATCCATTCATGCATGTCACTAATTAGATGA 158 >seq750760 Length=1299 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | || | |||||| || || || |||||| || || ||||| |||| Sbjct 361 CCACCTCTGAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCT 302 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || ||||| ||||| |||||||| || || | || Sbjct 301 AGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAGGA 242 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || ||||||||| | || || || || || Sbjct 241 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGGACTCCACC 182 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || |||||||| | |||||||||||| |||||||| || Sbjct 181 TCAAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 132 >seq48361 Length=1143 Score = 86.0 bits (94), Expect = 4e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 19954 TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATA 20013 |||||||| ||||||| ||||||||||||||||||||| ||||||||| || || || Sbjct 637 TTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTTTCTCGCCCGTA 578 Query 20014 TTTAGCCTTA 20023 |||||||||| Sbjct 577 TTTAGCCTTA 568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 331860569964875