Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq681135 176 6e-39 seq5092 91.5 2e-13 >seq681135 Length=1827 Score = 176 bits (194), Expect = 6e-39 Identities = 398/590 (67%), Gaps = 20/590 (3%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || |||||||||||||||| |||||||||| ||||| || || || || || Sbjct 565 CAAGCACGCGAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 624 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 32775 | ||| ||||| || || || || || ||||| ||||| || ||| | | | || || | Sbjct 625 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTTCCGGAGA 683 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGT 32832 |||| || ||||| || || || || | || | || || | ||| || || Sbjct 684 AGAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 743 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | ||||| ||||||| | ||| ||||| ||||| || || || || || | Sbjct 744 CG---ATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTG 800 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | | |||||| |||||| || || ||| || | ||| | || | ||| ||||| | Sbjct 801 CGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 860 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 |||| || || || |||||||||||||| || |||||||| |||||| | |||||||| Sbjct 861 ACATCTCAGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGG 920 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 | ||| || || | || | | | || | |||||| || ||||||||| | Sbjct 921 AGACCTGGACCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATTCCGTCAGAAG 980 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTTTATT 33130 | || || || || | | ||| | || || | || |||| |||||| || || || Sbjct 981 CGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTG--AGGTT-TT 1037 Query 33131 CCAATCATTGA----TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186 || |||||| || | ||| | || ||||| || | |||||||| || |||| Sbjct 1038 CC---CATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCT 1094 Query 33187 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 | ||||| || ||||| | ||||| || | || ||||| || || ||| Sbjct 1095 CGGCCTTCTTGTACATTTCCCAGACTGCAGGGTACTGAATCGGGAACATA 1144 >seq5092 Length=1596 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || |||| ||| | || | | ||| |||| ||| || Sbjct 1264 TCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCC 1205 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||||||||| ||||| || || ||||| ||||| |||||||||| ||| || || Sbjct 1204 ATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGA 1145 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || || ||| | || || |||| || ||||| || Sbjct 1144 AACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATAT 1085 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || || ||||||||||| ||||| || || || |||||| Sbjct 1084 TCCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 1042 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | || || ||||| ||||| ||||| | ||| | || || | Sbjct 848 GTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 789 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | ||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 788 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 730 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| ||||| || | ||| | || |||| | ||||| | || | Sbjct 729 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGATAGGACCTCTCAAG 670 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 669 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCGGTCATAAATGAT 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627643187550000