Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq736048 129 5e-25 seq109077 100 2e-16 seq611781 86.0 5e-12 seq313781 86.0 5e-12 >seq736048 Length=1016 Score = 129 bits (142), Expect = 5e-25 Identities = 154/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || |||||| | ||||| | || || ||| || Sbjct 407 ATGCAAATATTTGTGAAGACCCTTACTGGTAAAACTATCACCCTTGAGGTTGAGAGTTCA 348 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| ||||||| ||||| ||||| |||||||| ||| Sbjct 347 GACACCATCGA--CAATGTGAAAGC-AAAAATCCAGGACAAGGAAGGTATTCCACCCGAC 291 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || || || ||||||||| ||| ||| ||| || ||| Sbjct 290 CAGCAGAGGCTAATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACTAC 231 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||| || || ||||| || || || Sbjct 230 AATATACAGAAGGAATCAACCCTTCA 205 Score = 109 bits (120), Expect = 5e-19 Identities = 135/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| || || |||||| | ||||| | ||||| ||| || Sbjct 179 ATGCAGATTTTTGTGAAGACCTTAACTGGTAAAACAATCACTCTTGAAGTTGAGAGCTCA 120 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | ||||||| ||| ||||| ||||| ||||| |||||| Sbjct 119 GACACAATTGA--CAATGTCAAGGCAAAAATTCAG-GACAAGGAAGGCATTCCTCCTGAC 63 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| || | || ||||| || ||||| | || |||| |||||| ||| || ||| Sbjct 62 CAACAGAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTTTGGCTGACTAC 3 Query 25176 AA 25177 || Sbjct 2 AA 1 >seq109077 Length=726 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||| || || || | || || | || || ||| || Sbjct 420 ATGCAGATCTTCGTGAAGACTTTAACTGGCAAGACAATTACCTTAGAGGTTGAGAGCTCG 361 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || |||| || | ||| ||||| || ||||||||||| ||| Sbjct 360 GATACCATCGA--CAATGTGAAAGCGAAGATTCAG-GACAAGGAGGGGATTCCACCGGAC 304 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | ||||| || ||||| || | || |||| || ||| | | |||||| Sbjct 303 CAGCAGAGGTTGATTTTCGCGGGCAAGCAGCTTGAGGATGGGCGAACTCTTGCTGATTAC 244 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || || || || || ||||| Sbjct 243 AACATTCAGAAAGAGTCTACCCTCCACTTGGTGCT 209 >seq611781 Length=262 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||||||||| |||| || || ||||||| | || ||||| || Sbjct 94 AATGCAAATATTTGTAAAGACACTGACTGGAAAGACCATCACGCTTGAGGTGGAAAGCTC 153 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||| || ||||| || || ||| |||||| ||||| ||||| || || || ||| Sbjct 154 TGATACAATCGA--CAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCAGAC 211 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 || || || | |||||||| || || || | || |||| Sbjct 212 CAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATG 251 >seq313781 Length=385 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||| || | ||| ||||| |||||||||||||| ||||| ||| | | ||||| ||| Sbjct 45 AAGCGAAGATTCAG-GACAAGGAAGGGATTCCACCAGACCAGCAGAGACTGATTTTCGCC 103 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 ||||| || | || |||| || ||| | | |||||||| ||||| || || || || Sbjct 104 GGCAAGCAGCTTGAGGATGGGCGAACTCTTGCTGATTACAACATTCAGAAGGAGTCTACC 163 Query 25197 CTACATTTAGTGCT 25210 || || || ||||| Sbjct 164 CTCCACTTGGTGCT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429334763991875