Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq681135 187 3e-42 seq733908 86.0 7e-12 >seq681135 Length=1827 Score = 187 bits (206), Expect = 3e-42 Identities = 411/610 (67%), Gaps = 7/610 (1%) Strand=Plus/Plus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 |||| | |||||||| || ||| ||||| || |||||||| || || |||||||| Sbjct 558 TGTAGAGCAAGCACGCGAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTG 617 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTA 93199 ||| ||||| || || | || || |||||||| ||||| ||||| || ||| || || Sbjct 618 AGAAAGTTAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTT 676 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 || || || || || ||||||||| || ||||| | | ||||||||||| || || Sbjct 677 CCGGAGAAGAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCG 736 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 || | | ||||||| | |||||| | |||||| ||| | ||| || | || Sbjct 737 GA---GCCGTCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTA 793 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| |||| ||| || | | ||| | | ||| || || | || | ||| Sbjct 794 TCGATTGCGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAAC 853 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 ||| ||||| ||||| |||| || || || ||||| || ||||| ||||| | | Sbjct 854 AGACTGTACATCTCAGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGA 913 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 || || | || ||| || || | || || | |||||||||| ||| || || Sbjct 914 GCCTCGGAGACCTGGACCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATTCCG 973 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 || || || || || || || | ||||| | || || || ||||| || | || Sbjct 974 TCAGAAGCGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGG 1033 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 || ||||| | | || | || || |||||||| ||| | ||||||||||| || Sbjct 1034 TTTTCCCATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCC 1093 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACG 93678 || || || |||||||| ||||| | | | || ||||| || || || ||| || || Sbjct 1094 TCGGCCTTCTTGTACATTTCCCAGACTGCAGGGTACTGAATCGGGAACAT-ACAGAACCG 1152 Query 93679 ATTAGGGTTA 93688 || |||||| Sbjct 1153 ATCTGGGTTA 1162 >seq733908 Length=387 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 298 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 355 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 356 CGTGGGTTCAAATCCCACTTCTGACAA 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551597595345000