Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq109077 113 4e-20 seq726932 95.1 1e-14 seq736048 87.8 1e-12 seq313781 87.8 1e-12 seq750760 84.2 2e-11 seq662336 82.4 6e-11 seq620935 82.4 6e-11 >seq109077 Length=726 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || ||||| |||||||||||||| Sbjct 419 ATGCCACCACGGAGGCGGAGGACCAAGTGAAGTGTTGACTCTTTCTGAATGTTGTAATCC 478 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||||| || || || || ||| | || || | ||| |||||||| Sbjct 479 GCGAGAGTTCGGCCGTCTTCCAGCTGCTTCCCTGCGAAAATCAGCCTCTGCTGGTCCGGT 538 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || ||||| ||| | | |||| |||||||| | |||| Sbjct 539 GGAATGCCCTCCTTATCCTGGATCTTAGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCG 598 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || |||||||||||||| |||||||||||||| Sbjct 599 ACCTCTAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACAAAAATCTGCAT 648 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | ||||| ||||| |||||||||||||| Sbjct 191 ATACCACCACGCAGACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCA 250 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| ||||| || || || ||| | || | | ||| |||||||| Sbjct 251 GCAAGAGTTCGCCCATCCTCAAGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGT 310 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| ||| | | || | ||| || | | || Sbjct 311 GGAATCCCCTCCTTGTCCTGAATCTTCGCTTTCACATTGTCGATGGTATCCGAGCTCTCA 370 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| || | ||| || || || ||||||||| Sbjct 371 ACCTCTAAGGTAATTGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCATG 421 >seq726932 Length=530 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || || || || ||||| ||| Sbjct 53 GTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCA 112 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || |||||||| ||||| ||||| || Sbjct 113 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTG 172 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | ||||| || || | ||| | || || || || || ||| Sbjct 173 ACATTGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 232 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 233 TTCACGAAGATCTGCAT 249 >seq736048 Length=1016 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | |||||||| || || |||||||| || || || ||| |||||| Sbjct 426 AACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGCCAATGTCCGACCATCTTC 485 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || ||||||||||| | ||||| | ||| ||||| || ||||| || || ||||| Sbjct 486 CAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 545 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || || ||| | | || | |||||| | || || || | ||| | ||||| Sbjct 546 GATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAACTTCAAGGGTAATAGTTTT 605 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || || || || |||||||| |||||| Sbjct 606 TCCAGTGAGGGTCTTCACAAAAATTTGCATG 636 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 114204 TTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGT 114263 ||||| || || ||| || ||| ||||| ||||| ||||| |||| || | |||| Sbjct 1 TTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGT 60 Query 114264 TGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCG 114323 ||||| |||||||||||||| ||||| ||| ||| || | | |||| ||||| Sbjct 61 TGGTCAGGAGGAATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTCT 120 Query 114324 GTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | || || || | || | ||||| || || | || || |||||||||||||| Sbjct 121 GAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 179 >seq313781 Length=385 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | ||||| || || |||||||||||||| Sbjct 195 ATACCACCGCGCAGACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCA 136 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| ||||| || || || ||| | || || | ||| ||||| || Sbjct 135 GCAAGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGT 76 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| ||| | | |||| |||||||| | |||| Sbjct 75 GGAATCCCTTCCTTGTCCTGAATCTTCGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCG 16 Query 114333 ACGTCCACGGT 114343 || |||| ||| Sbjct 15 ACCTCCAGGGT 5 >seq750760 Length=1299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||||| || || || |||||||| || ||| | || || || || || || || || Sbjct 331 GTAGACTCCTTCTGGATGTTGTAGTCAGCT-AGGGTCCGGCCGTCCTCGAGCTGCTTCCC 273 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | ||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 272 GGCGAATATGAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 213 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | |||||| | ||| || || || | ||| | || || || || || || Sbjct 212 CACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTTATGGTCTTACCCGTTAGGGT 153 Query 114365 TTTTACAAAAATCTGCAT 114382 ||| || || |||||||| Sbjct 152 TTTCACGAAGATCTGCAT 135 >seq662336 Length=3756 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || |||||||| | || | || || |||||||| ||||| ||||| | ||| ||| Sbjct 290 AGCCTCAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCTGCAAGAGTGCGA 231 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| |||||||| ||||| | || | | ||| || || |||||||||||||| Sbjct 230 CCATCTTCCAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCC 171 Query 114285 TTGTC 114289 ||||| Sbjct 170 TTGTC 166 >seq620935 Length=1758 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || ||||| |||||| ||||||| ||||| |||||||| || |||||||| ||| Sbjct 95 TCCTCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTG 154 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | || | ||||| | ||||| || || | ||| | Sbjct 155 TCTTGGATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATG 214 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || || || || || ||||||||||| Sbjct 215 GTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCAT 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416262746623500