Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq681135 192 1e-43 >seq681135 Length=1827 Score = 192 bits (212), Expect = 1e-43 Identities = 563/854 (66%), Gaps = 24/854 (3%) Strand=Plus/Minus Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360 ||||| |||||||||||||| || || |||||||||||||| | ||||| Sbjct 1118 TCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTTTGGACCGCCGAGGAAGTCGACCTCT 1059 Query 42361 CCAAGGACACGGCCGGC--TGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCTCA 42414 | ||||| | || | ||||| |||| | | || ||| ||| ||| ||| Sbjct 1058 CTCAGGACCAG--CGTCAATGGGAAAACCTCAC---CAGCGA-CGAGAAGCACTTCATCA 1005 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 | || || |||||||||||||| |||||||| || ||| || || || ||| | Sbjct 1004 GTCATATCCTTGCCTTCTTCGCCGCTTCTGACGGAATCGTCCTCGAAAATCTCGCCGGAA 945 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 |||||||||| ||||| ||| || ||||| || |||||| || || ||||| |||| Sbjct 944 GGTTCATGAAGGAGGTCCAGGTCTCCGAGGCTCGTGCCTTCTATGGATTTCAGATTGCCA 885 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594 | || ||| | ||||||||| ||||| || | | |||| ||| |||||| Sbjct 884 TTGAAAACATCCACTCTGAGATGTACAGTCTGTTGTTAGAATCGTATATCAAGGATCCAA 825 Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 ||| ||| |||| || | || || || || || ||||| | |||||| || Sbjct 824 AGGAGAAAAACAGGCTCTTTCACGCAATCGATACCATCCCCTGTGTGGCGAAGAAAGCCC 765 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 | ||||| ||| |||||||| | |||| ||| || | ||| | ||| | || | Sbjct 764 AGTGGGCTCTCCGATGGATCGACGGCTCCGA---AACCTTTGCCGAACGCCTGCTCGCAT 708 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | || ||| || |||||||||||||| || |||| ||| || |||||||| ||| Sbjct 707 TCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGCTCGATATTCTGGCTAAAG- 649 Query 42775 AGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 | | | ||| ||||| ||| | || ||||| || || | ||| | |||||||| Sbjct 648 AAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATGAGTTAATCTCGCGAGACGAGGGC 589 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG 42893 | || | || || || || | || ||| |||| || ||| | || | || Sbjct 588 TTACACTGCGATTTCGCGTG---CTTGCTCTACAGCCTACTTAGGAATAAACTAAGCGAG 532 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 ||| | || ||| ||| || | || | ||||| || || | |||||| || || | Sbjct 531 GAGAGAGTGAAGGCAATCGTCGCCGACTCGGTGGATATAGAAAGAGAGTTCGTC-TGC-G 474 Query 42954 TCGC-TGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 ||| | ||||| | || || || |||||| | || ||| | | |||||| | | Sbjct 473 ACGCGTTACCGTGCGCTCTAGTGGGGATGAACAGTGCTCTAATGAGTCAATACATCGAAT 414 Query 43012 ACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCC 43071 ||| ||||| | || || || ||||| | | | |||||| || | Sbjct 413 TCGTTGCCGATCGCCTGCTCGGCGCCTTGGGTTACGGGAAGATGTACAACGTTTCGAATC 354 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 | ||||||| |||||| ||||| ||| |||| ||||||||||| ||||||||| | | Sbjct 353 CGTTCGACTGGATGGAGCTAATCTCTTTGCAGGGAAAGACCAACTTCTTCGAGAAGAGGG 294 Query 43132 TCGCCGACTACCAG 43145 | | || |||||| Sbjct 293 TTGGGGAGTACCAG 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 935413719030000