Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq109077 120 7e-22 seq689433 116 9e-21 seq702768 100 7e-16 seq313781 98.7 2e-15 seq681135 95.1 3e-14 seq736048 87.8 4e-12 seq611781 86.0 1e-11 >seq109077 Length=726 Score = 120 bits (132), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || || | |||| || ||||| || || || || | Sbjct 418 CATG-CCACCACGGAGGCGGAGGACCAAGTGAAGTGTTGACTCTTTCTGAATGTTGTAAT 476 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | ||||| || || |||||||| | || || |||||||| ||||| | ||| || Sbjct 477 CCGCGAGAGTTCGGCCGTCTTCCAGCTGCTTCCCTGCGAAAATCAGCCTCTGCTGGTCCG 536 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| || || || ||||||||||| || ||||||||||| || || | ||| || Sbjct 537 GTGGAATGCCCTCCTTATCCTGGATCTTAGCTTTCACGTTGTCAATGGTGTCGGAGCTTT 596 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || || || || ||||| ||||||||||| || || || ||||||||| Sbjct 597 CGACCTCTAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACAAAAATCTGCATT 649 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || || || | || ||||| | || || || |||||| Sbjct 2 TCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCAGCGAAG 61 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| ||| |||||| ||||| || ||||| || || |||||||| || Sbjct 62 ATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACATTA 121 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || || |||||||| |||||||| ||||||||||| Sbjct 122 TCAATGGTGTCGGAACTC---TCCACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTCTTC 178 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 179 ACGAAGATTTGCAT 192 >seq689433 Length=414 Score = 116 bits (128), Expect = 9e-21 Identities = 167/233 (72%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || | |||| ||| || || || || || || || || Sbjct 248 CCCCCACGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCA 189 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || || || || || || |||||||||||||| | ||| ||| ||||| Sbjct 188 AGTGTCCGACCATCCTCCAACTGCTTCCCTGCGAAGATCAGCCTCTGCTGA---TCTGGA 132 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||| || || || ||||| ||||| || ||||| || ||||| | ||| |||| Sbjct 131 GGGATCCCCTCCTTGTCCTGAATTTTGGCCTTCACATTATCTATGGTATCTGAGCTC--- 75 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 74 TCCACCTCTAGTGTGATCGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCAT 22 >seq702768 Length=508 Score = 100 bits (110), Expect = 7e-16 Identities = 142/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || || || || || || || || || || || || ||||| ||| Sbjct 291 TCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTCCAACTGCTTCCCTGCAAAG 232 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| ||| ||||| ||| ||||| || ||||| ||||| || ||||| Sbjct 231 ATGAGCCTCTGCTGA---TCTGGAGGGATCCCTTCCTTGTCCTGAATTTTTGCCTTCACA 175 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || ||||||| || |||| || || || || || || ||||| || ||||| ||| Sbjct 174 TTATCTATAGTGTCTGAGCTC---TCAACCTCTAGTGTAATTGTCTTTCCCGTCAGGGTC 118 Query 288457 TTGACGAATATCTGCAT 288473 || || ||||||||||| Sbjct 117 TTCACAAATATCTGCAT 101 >seq313781 Length=385 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || || || | || ||||| | || || || |||||| Sbjct 384 TCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAAG 325 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| ||| |||||| || || || ||||| || || ||||| || || Sbjct 324 ATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATCTTTGCTTTGACATTA 265 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || || |||||||| ||||| || ||||| ||||| Sbjct 264 TCAATGGTGTCGGAACTC---TCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTC 208 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 207 ACGAAGATTTGCAT 194 >seq681135 Length=1827 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/200 (72%), Gaps = 10/200 (5%) Strand=Plus/Minus Query 269113 GAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTC 269172 |||| ||||||| | || ||||| | || || || | | || ||||| | ||| Sbjct 492 GAAAGAGAGTTCGTCTGCGACGCGTTACCGTGCGCTCTAGTGGGGATGAACAGTGCTCTA 433 Query 269173 ATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCAC--TCGGTTATGAGA 269230 |||| |||||| ||||||||||| || ||||| || | |||| | | ||||| | || Sbjct 432 ATGAGTCAATACATCGAATTCGTTGCCGATCGC--CTGCTCGGCGCCTTGGGTTACGGGA 375 Query 269231 AAGTGTACAA---TTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAA 269287 | ||||||| |||||| ||| |||| || ||||| ||||| || | | |||| Sbjct 374 AGATGTACAACGTTTCGAA---TCCGTTCGACTGGATGGAGCTAATCTCTTTGCAGGGAA 318 Query 269288 AGACGAACTTCTTCGAAAAG 269307 |||| ||||||||||| ||| Sbjct 317 AGACCAACTTCTTCGAGAAG 298 >seq736048 Length=1016 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||| ||||| || | || || || ||||||| || || || || || Sbjct 216 TTCCTTCTGTATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAA 275 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||| || ||| || ||||| || ||||||||||| |||||||| || Sbjct 276 GATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGATTTTTGCTTTCACATT 335 Query 288402 TTCTATAGAATCGCTCGATTCT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | | || | ||| || || || ||||| || || || || || ||||| Sbjct 336 GTCGATGG--TGTCTGAACTCTCAACCTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTC 393 Query 288460 ACGAATATCTGCAT 288473 || ||||| ||||| Sbjct 394 ACAAATATTTGCAT 407 >seq611781 Length=262 Score = 86.0 bits (94), Expect = 1e-11 Identities = 88/114 (77%), Gaps = 6/114 (5%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||||||||| || || ||||||||||| || || || || || | ||| ||| | Sbjct 204 GGGATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCGATTGTATCAGAGCT---T 148 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || |||||||| ||||| || ||||| ||||| || ||||| |||||| Sbjct 147 TCCACCTCAAGCGTGATGGTCTTTCCAGTCAGTGTCTTTACAAATATTTGCATT 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1168226083277750