Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq736048 127 2e-24 seq750760 111 2e-19 seq726932 109 6e-19 seq313781 109 6e-19 seq620935 105 7e-18 seq109077 104 3e-17 seq702768 86.0 7e-12 >seq736048 Length=1016 Score = 127 bits (140), Expect = 2e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||||||||| | ||||| || | ||| ||| || || || || ||||||||| Sbjct 637 CCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCC 696 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||||| | || || |||||||||||||| ||||| || | ||||||||| | || Sbjct 697 AATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGGA 756 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | |||||||||| ||||||| ||||| | | | ||||| |||| || Sbjct 757 ATACCCTCCTTGTCCTGGATTTTTGCTTTGACATTATCAATGGTGTCTGAGCTC---TCA 813 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 814 ACTTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 863 Score = 113 bits (124), Expect = 5e-20 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || |||||||| ||||||| ||| || | || ||||||||||||||||| || Sbjct 217 TCCTTCTGTATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAG 276 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | ||||||||||| ||| | | ||||||||| ||||||| ||| | | Sbjct 277 ATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGATTTTTGCTTTCACATTG 336 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | ||||| ||| || || || | ||||| ||||| || || || ||||| Sbjct 337 TCGATGGTGTCTGAACTC---TCAACCTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTC 393 Query 42195 ACAAAGATTTGCAT 42208 ||||| |||||||| Sbjct 394 ACAAATATTTGCAT 407 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||| | ||||| || | ||| |||||| || || || ||||||||| Sbjct 865 CCACCTCTCAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCAGCC 924 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||||| | || || |||||||||||||| || || || | ||||||||| | || Sbjct 925 AATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGA 984 Query 42102 ACGCTCTCCTTGTCCATGATTTTT 42125 | | |||||||||| ||| ||| Sbjct 985 ATACCCTCCTTGTCCTGGATCTTT 1008 >seq750760 Length=1299 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | || | |||||| || | || |||||| || || ||||| ||||| Sbjct 361 CCACCTCTGAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCT 302 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || ||||| |||| || |||||||| || ||||||||||| || |||||||| | || Sbjct 301 AGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAGGA 242 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| ||| || || | | | | ||||| || ||||| Sbjct 241 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGGACTCCACC 182 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCACG 42215 || | || ||||| || |||||||| || || || ||||| ||||| ||| || Sbjct 181 TCAAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTCGCG 128 >seq726932 Length=530 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || ||||| || |||||||| Sbjct 58 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCAGCGAA 117 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | ||| | || ||||||||| ||| || |||| | Sbjct 118 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 177 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| |||||| || || | || ||||| || |||||||| || || || Sbjct 178 GTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 237 Query 42197 AAAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 238 GAAGATCTGCATCTT 252 >seq313781 Length=385 Score = 109 bits (120), Expect = 6e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||||| |||| | | || || |||||||| || ||||| Sbjct 385 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAA 326 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || | |||||| || | ||| | | |||||||||| ||| | |||| ||||| Sbjct 325 GATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCC-TGAATCTTTGCTTTGACAT 267 Query 42136 TCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| ||| ||||| || | ||||||||| || || || || |||| Sbjct 266 TATCAATGGTGTCGGAACTC---TCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCT 210 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||||||||| Sbjct 209 TCACGAAGATTTGCAT 194 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || |||||| ||||| ||||||||||| ||||| ||| | Sbjct 181 ACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGCCC 122 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || |||| ||||||||| | ||| | | ||||| Sbjct 121 ATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCTTCCTT 62 Query 42113 GTCC 42116 |||| Sbjct 61 GTCC 58 >seq620935 Length=1758 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || || || || || |||| || ||||| || |||||||| Sbjct 58 CTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTGCCAGCGAA 117 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||| ||| || |||| | Sbjct 118 GATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 177 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||||| || || | || ||||| || |||||||| ||||| || Sbjct 178 ATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTCTTCAC 237 Query 42197 AAAGATTTGCATTTTC 42212 || || ||||| ||| Sbjct 238 GAAAATCTGCATCTTC 253 >seq109077 Length=726 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||||| |||| | | || || |||||||| |||||||| Sbjct 1 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCAGCGAA 60 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | || |||||| || | ||| | | ||||||||| ||| | |||| ||| | Sbjct 61 GATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCC-TGAATCTTTGCTTTCACAT 119 Query 42136 TCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| ||| ||||| || | ||||||||| || || || || |||| Sbjct 120 TATCAATGGTGTCGGAACTC---TCCACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTCT 176 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||||||||| Sbjct 177 TCACGAAGATTTGCAT 192 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || ||| || ||||| ||||||||||| ||||| ||| | Sbjct 205 ACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTTCGCCC 264 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || | | ||||||||| | ||| | | |||||| Sbjct 265 ATCCTCAAGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGGAATCCCCTCCTT 324 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 |||| ||| | || | ||| | | | | || || |||| || || || | | Sbjct 325 GTCC-TGAATCTTCGCTTTCACATTGTCGATGGTATCCGAGCTC---TCAACCTCTAAGG 380 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || ||||| |||| ||||| || ||||| ||||| Sbjct 381 TAATTGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 420 >seq702768 Length=508 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||| |||||||| | || || | |||||| || || || Sbjct 292 CTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTCCAACTGCTTCCCTGCAAA 233 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | |||||| || | || | | ||||||||| ||| |||||| || | Sbjct 232 GATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCC-TGAATTTTTGCCTTCACAT 174 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || || | || || || || ||||| || |||| Sbjct 173 TATCTATAGTGTCTGAGCTC---TCAACCTCTAGTGTAATTGTCTTTCCCGTCAGGGTCT 117 Query 42193 TTACAAAGATTTGCAT 42208 | ||||| || ||||| Sbjct 116 TCACAAATATCTGCAT 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538078590270000