Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq109077 114 1e-20 seq611781 102 8e-17 seq313781 102 8e-17 seq726932 100 3e-16 seq620935 100 3e-16 seq113432 96.9 3e-15 seq736048 91.5 1e-13 seq702768 87.8 2e-12 >seq109077 Length=726 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| |||||||||||||| |||| || || ||||||| |||||| Sbjct 446 TGAAGTGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCTTCCAGCTGC 505 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || |||| |||| ||||||||| || ||||| || || || || || | | || Sbjct 506 TTCCCTGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGGA-TCTT 564 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| || || | || || | || || |||| ||| | ||||| ||||| Sbjct 565 AGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTTTCCGGT 624 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 || |||||| || ||||| |||||| Sbjct 625 CAGAGTTTTAACAAAAATCTGCATT 649 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| | || | || || ||||| |||||||||||||| || Sbjct 193 ACCACCACGCAGACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGC 252 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || ||| | || |||||||||||||| || |||| | || ||||||||| || || Sbjct 253 AAGAGTTCGCCCATCCTCAAGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGG 312 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| || || || || || | | || ||||| ||| || | ||||| | || | Sbjct 313 AATCCCCTCCTTGTCCTG-AATCTTCGCTTTCACATTGTCGATGGTATCCGAGCTCTCAA 371 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||| || | |||||||| || ||||| || ||||| || ||||| Sbjct 372 CCTCTAAGGTAATTGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 420 >seq611781 Length=262 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || ||||||||||| || ||| |||| | || |||||||| || || |||||||| || Sbjct 249 TCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGGATTCCTTCCTTG 190 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| ||||| ||||||| || | ||||||| | ||||| || | || | | Sbjct 189 TCTTGGATTTTCGCCTTTACATTGTCGATTGTATCAGAGCTTTCCACCTCAAGCGTGATG 130 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || |||| || ||||| || ||||||||| Sbjct 129 GTCTTTCCAGTCAGTGTCTTTACAAATATTTGCATT 94 >seq313781 Length=385 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | |||||| | || | || || || || |||||||||||||| || Sbjct 193 ACCACCGCGCAGACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGC 134 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || ||| | || ||||||||||||||||| |||| || | ||||||||| || || Sbjct 133 AAGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGG 74 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 ||| ||||| || || || || || Sbjct 73 AATCCCTTCCTTGTCCTGAATCTT 50 >seq726932 Length=530 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||||| || || || |||||||| || || | ||| || |||| Sbjct 38 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCC 97 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || || || | ||||| ||||||||||| || || || ||||| || || Sbjct 98 TCCAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 157 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || ||| | || || |||| |||| |||| Sbjct 158 TGGATCTTAGCCTTGACATTGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTC 217 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || || | ||||| ||||| || ||||| || Sbjct 218 TTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 252 >seq620935 Length=1758 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || || ||||| || || | ||| || |||| Sbjct 38 AGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCC 97 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| ||||| || | ||||| ||||||||||| || || || ||||| || ||| Sbjct 98 TCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCT 157 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || ||| | || || |||| |||| |||| Sbjct 158 TGGATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATGGTC 217 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || || | || || |||||||| ||||| || Sbjct 218 TTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 252 >seq113432 Length=226 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || ||||||||||| || ||| |||| | || |||||||| || || |||||||| || Sbjct 222 TCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCTTCCTTG 163 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| ||||| ||||||| || |||||||| | || ||||| | || | | Sbjct 162 TCTTGGATTTTCGCCTTTACATTGTCAACTGTATCTGAGCTCTCAACTTCAAGGGTGATG 103 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| ||||| | || || || || ||||||||| Sbjct 102 GTCTTTCCGGTGAGTGTCTTAACAAATATTTGCATT 67 >seq736048 Length=1016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || ||||| || || || ||||| || || | || || | ||| Sbjct 196 AGAACAAGGTGAAGGGTTGATTCCTTCTGTATATTGTAGTCAGCCAAAGTTCGACCATCT 255 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || |||| |||||||||||| ||||| ||||| || || Sbjct 256 TCTAGCTGCTTACCAGCAAAGATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTGTCC 315 Query 64352 TGTATTTTTTGCTTT 64366 || | |||||||||| Sbjct 316 TGGA-TTTTTGCTTT 329 >seq702768 Length=508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || |||||||||||||| || | || || | || || | |||| Sbjct 303 TGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTCCAACTGC 244 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | ||||||| |||||| || ||||| || ||||| || || || |||||| Sbjct 243 TTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGAATTTTT 184 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | || || | || || |||| || | ||||| || ||| Sbjct 183 GCCTTCACATTATCTATAGTGTCTGAGCTCTCAACCTCTAGTGTAATTGTCTTTCCCGTC 124 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || || || || ||||| Sbjct 123 AGGGTCTTCACAAATATCTGCAT 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494922375945000