Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq736048 114 1e-20 seq109077 114 1e-20 seq689433 107 2e-18 seq726932 100 3e-16 seq662336 91.5 1e-13 seq620935 91.5 1e-13 seq313781 84.2 2e-11 >seq736048 Length=1016 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || || | ||||| || | ||||| || || || || ||||| || || Sbjct 409 CCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGCC 468 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || |||||||| ||||| | || | | |||||| || || || Sbjct 469 AATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGA 528 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| |||||| || | | |||| |||||| | |||||| ||| Sbjct 529 ATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAACT 588 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||||| || || || || || |||||||| |||||| Sbjct 589 TCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCATG 636 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || | ||| || | ||||| || | || |||||||| || || || ||||| || Sbjct 637 CCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCC 696 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || ||||| | || | | |||||| || || || Sbjct 697 AATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGGA 756 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| |||||| ||| |||| | || | |||||| | ||||| || Sbjct 757 ATACCCTCCTTGTCCTGGATTTT-TGCTTTGACATTATCAATGGTGTCTGAGCTCTCAAC 815 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | ||| | ||||| || || || || || |||||||| |||||| Sbjct 816 TTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCATG 864 Score = 102 bits (112), Expect = 8e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 126935 TTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGC 126994 ||||| || ||| ||||| ||| || |||||||||||||| |||||| | ||| Sbjct 1 TTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGT 60 Query 126995 TGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTC 127053 || || ||||| ||||| ||||||||| ||| ||| || ||||| | || | ||||| Sbjct 61 TGGTCAGGAGGAATGCCTTCCTTGTCC-TGAATTTTTGCCTTGACATTGTCAATTGTGTC 119 Query 127054 CGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| ||||| | || | ||||| || || | || || |||||||||||||| Sbjct 120 TGAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 179 >seq109077 Length=726 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||||||||||| ||||| |||||||| | Sbjct 194 CCACCACGCAGACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCA 253 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| | ||||| | |||||| || || || Sbjct 254 AGAGTTCGCCCATCCTCAAGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGGA 313 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || ||| || | | |||| ||| |||| ||||| || Sbjct 314 ATCCCCTCCTTGTCCTGAATCTTCGCTTTCACATTGTCGATGGTATCCGAGCTCTCAACC 373 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || ||||| || | ||| || || || ||||||||| Sbjct 374 TCTAAGGTAATTGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCATG 421 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || |||||||| ||||| |||||||| | Sbjct 422 CCACCACGGAGGCGGAGGACCAAGTGAAGTGTTGACTCTTTCTGAATGTTGTAATCCGCG 481 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| | |||| | |||||| || || || Sbjct 482 AGAGTTCGGCCGTCTTCCAGCTGCTTCCCTGCGAAAATCAGCCTCTGCTGGTCCGGTGGA 541 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| || || | |||| || | |||||| | || ||||| Sbjct 542 ATGCCCTCCTTATCCTGGATCTTAGCTTTCACGTTG-TCAATGGTGTCGGAGCTTTCGAC 600 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || |||||||||||||| |||||||||||||| Sbjct 601 CTCTAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACAAAAATCTGCAT 648 >seq689433 Length=414 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || ||||| |||||||| | | || ||| ||| || Sbjct 230 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACCATCCTCC 171 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||| || || ||| |||||| | ||||||||| ||||| || |||||||||||| Sbjct 170 AACTGCTTCCCTGCGAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGA 111 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||| | | || | ||| || | ||||| || || | || | ||| || Sbjct 110 ATTTTGGCCTTCACATTATCTATGGTATCTGAGCTCTCCACCTCTAGTGTGATCGTCTTT 51 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || ||||| |||||||| Sbjct 50 CCCGTCAGGGTCTTCACAAATATCTGCAT 22 >seq726932 Length=530 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 20 GCGCCACCACGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 79 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || || || || ||||||||||||||| |||| | |||||||| || || Sbjct 80 GCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGT 139 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||| ||||||||| ||| || ||||| | |||| |||||| | || Sbjct 140 GGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGACGATTCA 199 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || || || ||||| || || |||||||| Sbjct 200 ACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 249 >seq662336 Length=3756 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||||||||| || || ||||| | | |||||| ||| || || ||||| ||| Sbjct 269 GTGGACTCTTTTTGGATGTTATAATCTGCAAGAGTGCGACCATCTTCCAGTTGTTTGCCA 210 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 || | ||||||| ||||||||| ||||| ||||| ||||||||| Sbjct 209 GCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 165 >seq620935 Length=1758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||||| || | || ||||| || || |||||||| ||| Sbjct 20 GCGCCACCACGGAGGCGGAGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCG 79 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || || || || |||||||| |||||| |||| | |||||||| || || Sbjct 80 GCTAGGGTTCGGCCGTCCTCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGC 139 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||| |||||||| ||| || ||||| | |||| ||||| | || Sbjct 140 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCA 199 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || || || || || || ||||||||||| Sbjct 200 ACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCAT 249 >seq313781 Length=385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| || ||| || | ||| || ||||| || || ||| | Sbjct 385 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAA 326 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTT 127040 ||||| | ||||||||| || || || |||||||||||| ||| | | ||| |||| | Sbjct 325 GATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCC-TGAATCTTTGCTTTGACAT 267 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 || | |||||| | |||||| || || | || | || || || ||||| || || | Sbjct 266 TATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTCA 207 Query 127101 CAAAAATCTGCAT 127113 | || || ||||| Sbjct 206 CGAAGATTTGCAT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471006574470000