Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq109077 100 3e-16 seq620935 96.9 3e-15 seq726932 87.8 2e-12 seq662336 84.2 2e-11 seq736048 82.4 7e-11 >seq109077 Length=726 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| || || || || || ||||| || ||| || |||| || Sbjct 446 TGAAGTGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCTTCCAGCTGC 505 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || |||||| | |||| | ||||||||||| |||||||| || ||||| || || || Sbjct 506 TTCCCTGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGGATCTTA 565 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | || | ||||||||| ||||| || ||||||| || || ||||| Sbjct 566 GCTTTCA-CGTTGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTTTCCGGT 624 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| |||||||| ||||| Sbjct 625 CAGAGTTTTAACAAAAATCTGCAT 648 >seq620935 Length=1758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || ||||| ||||| |||||||| || ||| Sbjct 23 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGCT 82 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || |||| ||||| || ||| | || | || |||||||||||||| Sbjct 83 AGGGTTCGGCCGTCCTCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 142 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || ||||| || || |||| || | ||||| || || || || Sbjct 143 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAACC 202 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || ||||| || || || ||||| |||||| Sbjct 203 TCTAGGGTTATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATC 250 >seq726932 Length=530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || || ||||| ||||| || || ||| Sbjct 23 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 82 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || |||| |||||||| ||| | || | || ||||||||||| || Sbjct 83 AGGGTTCGGCCGTCCTCCAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 142 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || || || || |||| || | |||||| || || || || Sbjct 143 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGACGATTCAACC 202 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || || || ||||| ||||| || || || |||||| Sbjct 203 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 250 >seq662336 Length=3756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||| || || || || || || || |||||||| |||||||| Sbjct 301 TTCCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCTG 242 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || | ||| |||| |||||| || || | ||||||| ||||| || || | Sbjct 241 CAAGAGTGCGACCATCTTCCAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAG 182 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 |||||||||| || || |||| Sbjct 181 GAATGCCTTCCTTGTCCTGAA 161 >seq736048 Length=1016 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || || || | || | ||| |||| ||| Sbjct 433 TGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGCCAATGTCCGACCATCTTCCAGCTGT 492 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || |||| | | |||||||| || ||||| || || || || || ||||| Sbjct 493 TTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTA 552 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | |||||| ||| ||| ||||| || |||| ||||| || || Sbjct 553 GCTTTCACATTATCGATGGTGTCTGAACTCTCAACTTCAAGGGTAATAGTTTTTCCAGTG 612 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||||||||| Sbjct 613 AGGGTCTTCACAAAAATTTGCAT 635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447731063505000