Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq681135 105 8e-18 seq728136 86.0 8e-12 >seq681135 Length=1827 Score = 105 bits (116), Expect = 8e-18 Identities = 179/257 (70%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| || ||||| | ||||| ||||| | || ||||||||||| || ||| Sbjct 590 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 649 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| |||| || || || ||||||||||| || ||||| || ||||| Sbjct 650 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 709 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | || || |||||||||| ||| || | ||| | |||||||| Sbjct 710 GCGAGCAGGCGTTCGGCAAAGGTTTCGGA---GCCGTCGATCCATCGGAGAGCCCACTGG 766 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT--G 127775 || || ||| | | ||| |||| ||| | ||| || | |||||| ||| |||||| Sbjct 767 GCTTTCTTCGCCACACAGGGGATGGTATCGATTGCGTGAAAGAG--CCTGTTTTTCTCCT 824 Query 127776 ATGGATCTTTGATGTAC 127792 |||||| ||||| ||| Sbjct 825 TTGGATCCTTGATATAC 841 >seq728136 Length=2057 Score = 86.0 bits (94), Expect = 8e-12 Identities = 188/282 (67%), Gaps = 10/282 (4%) Strand=Plus/Minus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| ||||||||||| ||||| || |||||||||||||| || | ||||||||| | Sbjct 1815 GAATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACC 1756 Query 12851 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 | ||| || | | ||| | || || || |||||||| |||||||| || || || Sbjct 1755 TCCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCA 1696 Query 12911 CGG-----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 || |||||||| || ||||| | || || ||||| || || || Sbjct 1695 GGGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACT 1641 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCA 13025 || ||||||| || || || | | ||| | || || ||| || || | ||| Sbjct 1640 CCTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCT 1581 Query 13026 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || || | |||| ||| || |||||||| || || || ||| Sbjct 1580 CCGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGGT 1539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607708598355000