Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq750760 143 6e-29 seq726932 143 6e-29 seq736048 138 3e-27 seq109077 134 3e-26 seq313781 129 1e-24 seq689433 123 6e-23 seq620935 120 7e-22 seq451089 91.5 3e-13 seq695064 87.8 4e-12 seq702768 86.0 1e-11 >seq750760 Length=1299 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| |||| |||||||||||| | |||| || || Sbjct 346 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTCCGGCCGTCC 287 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||| ||||| || |||||||||||| ||| ||||| ||| Sbjct 286 TCGAGCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 227 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | | || || || | || || ||| Sbjct 226 TGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTTATGGTC 167 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || |||||||| || || || Sbjct 166 TTACCCGTTAGGGTTTTCACGAAGATCTG 138 >seq726932 Length=530 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| ||||||||| || | || | || || Sbjct 38 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCC 97 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||| Sbjct 98 TCCAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 157 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | ||| || || | || || ||| Sbjct 158 TGGATCTTAGCCTTGACATTGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTC 217 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || |||||||| || || || Sbjct 218 TTCCCCGTTAGGGTTTTCACGAAGATCTG 246 >seq736048 Length=1016 Score = 138 bits (152), Expect = 3e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || || ||||| || | ||||||||||||||||| | |||||| Sbjct 196 AGAACAAGGTGAAGGGTTGATTCCTTCTGTATATTGTAGTCAGCCAAAGTTCGACCATCT 255 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || | ||||||||| || ||| ||||| ||| Sbjct 256 TCTAGCTGCTTACCAGCAAAGATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTGTCC 315 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || |||||| ||||| |||| |||||||| | || || || | ||||| || Sbjct 316 TGGAT-TTTTGCTTTCACATTGTCGATGGTGTCTGAACTCTCAACCTCAAGGGTGATAGT 374 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| ||||| Sbjct 375 TTTACCAGTAAGGGTCTTCACAAATATTTG 404 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || ||||| |||| ||||||||| ||||| |||| |||||| Sbjct 424 AGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGCCAATGTCCGACCATCT 483 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || || ||||| | ||||||||| || ||| || || ||| Sbjct 484 TCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCC 543 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || ||||| |||| |||||||| | || || || | || || || Sbjct 544 TGGAT-TTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAACTTCAAGGGTAATAGT 602 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || |||||||||||||| Sbjct 603 TTTTCCAGTGAGGGTCTTCACAAAAATTTG 632 Score = 111 bits (122), Expect = 4e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||| || |||| ||| || |||||||| |||| ||||| Sbjct 652 AGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCCAATGTCCGGCCATCC 711 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || || || || | ||||||||| || ||| || || ||| Sbjct 712 TCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCC 771 Query 199538 TGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || |||||||| || || | |||||||| | || || || | ||||| || Sbjct 772 TGGAT-TTTTGCTTTGACATTATCAATGGTGTCTGAGCTCTCAACTTCAAGGGTGATAGT 830 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || |||||||||||||| Sbjct 831 TTTTCCAGTGAGGGTCTTCACAAAAATTTG 860 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||| || |||||||| |||| ||||| Sbjct 880 AGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCAGCCAATGTCCGGCCATCC 939 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||||||||| ||| ||| || || ||| Sbjct 940 TCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCC 999 Query 199538 TGAATCTTTTGCTTCAC 199554 || |||||| |||||| Sbjct 1000 TGGATCTTTGCCTTCAC 1016 Score = 102 bits (112), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 ||||||||||||||||| | ||||| || ||||| ||||| || ||||| || | ||| Sbjct 1 TTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGT 60 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 ||||| ||| ||| ||||| |||||||| ||| ||| || || | |||||| Sbjct 61 TGGTCAGGAGGAATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTCT 120 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | || || || | ||||| || ||||| || | || ||||||||||| || Sbjct 121 GAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTG 176 >seq109077 Length=726 Score = 134 bits (148), Expect = 3e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| |||| ||||||||| |||| ||||| ||||||||||||||||| || ||||| Sbjct 1 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCAGCGAA 60 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| | | |||||| ||||| || ||||| |||||||||||| ||||| Sbjct 61 GATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACATT 120 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 || | |||||| | | || || |||| |||||| ||||| || || ||||| ||||| Sbjct 121 ATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTCTTCAC 180 Query 199618 AAAAATTTG 199626 || ||||| Sbjct 181 GAAGATTTG 189 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || ||||| || || | |||||| || || | ||| | || ||| Sbjct 437 AGGACCAAGTGAAGTGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCT 496 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || ||||| || || | |||||||||||| ||| || || ||| Sbjct 497 TCCAGCTGCTTCCCTGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCC 556 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | |||| || || | || || ||| Sbjct 557 TGGATCTTAGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTC 616 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||| |||||||| || Sbjct 617 TTTCCGGTCAGAGTTTTAACAAAAATCTG 645 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || ||||| || || | |||||| ||||| | ||| | ||||| Sbjct 209 AGCACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTTCGCCCATCC 268 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| || | | |||||||||||| ||| || || ||| Sbjct 269 TCAAGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGGAATCCCCTCCTTGTCC 328 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||| |||| ||| || | | || || || || || || ||| Sbjct 329 TGAATCTTCGCTTTCACATTGTCGATGGTATCCGAGCTCTCAACCTCTAAGGTAATTGTC 388 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| ||||| || || || Sbjct 389 TTGCCAGTTAAAGTCTTCACGAAGATCTG 417 >seq313781 Length=385 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| |||| ||||||||| |||| ||||| ||||||||||||||||| |||||||| Sbjct 385 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAA 326 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| || | |||||| ||||| || || || |||||||||||| || || Sbjct 325 GATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATCTTTGCTTTGACATT 266 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 || | |||||| | | || || |||| |||||| ||||| || || || || ||||| Sbjct 265 ATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTCAC 206 Query 199618 AAAAATTTG 199626 || ||||| Sbjct 205 GAAGATTTG 197 Score = 105 bits (116), Expect = 2e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| || | |||||| ||||| | ||| | ||||| Sbjct 177 AGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGCCCATCC 118 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||| || || | ||||||||| || ||| ||||| ||| Sbjct 117 TCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCC 58 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||||||| |||||| || | |||||| | |||| || |||| ||||| Sbjct 57 TGAATCTTCGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCCAGGGTGAT 2 >seq689433 Length=414 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| |||||||| || | |||||| ||||| | ||| Sbjct 242 CGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTC 183 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| || |||||||| || | |||||| || ||| || || Sbjct 182 CGACCATCCTCCAACTGCTTCCCTGCGAAGATCAGCCTCTGCTGATCTGGAGGGATCCCC 123 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| || |||||| || | ||| |||| | || || || | Sbjct 122 TCCTTGTCCTGAATTTTGGCCTTCACATTATCTATGGTATCTGAGCTCTCCACCTCTAGT 63 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || |||||||| || || Sbjct 62 GTGATCGTCTTTCCCGTCAGGGTCTTCACAAATATCTG 25 >seq620935 Length=1758 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| |||||||| || | || | || || Sbjct 38 AGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCC 97 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || ||||||||||| |||||||||||||| || ||||| || Sbjct 98 TCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCT 157 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||||| | || ||| || || | || || ||| Sbjct 158 TGGATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATGGTC 217 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || ||||| ||||| || Sbjct 218 TTCCCCGTTAGGGTCTTCACGAAAATCTG 246 >seq451089 Length=234 Score = 91.5 bits (100), Expect = 3e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| |||||||||||| | ||| | ||||||||| |||||||||||||||||| Sbjct 87 CCTTTCTGGATGTTGTAGTCAGCAAGAGTTCGTCCATCTTCAAGCTGCTTTCCGGCGAAG 28 Query 199499 ATGAGACGCTGCTGGTCCGG 199518 || | |||||||| ||||| Sbjct 27 ATCAATCGCTGCTGATCCGG 8 >seq695064 Length=699 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| ||||| || |||||||| |||| ||||||||| |||| ||||| |||||| Sbjct 628 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCT 687 Query 199478 TCCAGCTGCTT 199488 ||||||||||| Sbjct 688 TCCAGCTGCTT 698 >seq702768 Length=508 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| || || ||||||||||| ||||| ||||| | || ||||||||| | ||| Sbjct 227 CTCATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGGACTCTTGCTGATTACAACATTCAG 286 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||||||||||||| | ||| | | ||||| Sbjct 287 AAGGAGTCTACTCTTCACTTGGTTCTTCGTCTTCG 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1167500382535375