Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq750760 123 3e-23 seq620935 118 1e-21 seq726932 116 4e-21 seq313781 100 3e-16 seq109077 91.5 2e-13 >seq750760 Length=1299 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| ||||| | || | ||||| || | ||| |||||| ||||| |||||||| | Sbjct 362 GCCACCTCTGAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGC 303 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||| || || |||| ||||||||||| ||||||||||| | ||| |||||||| | || Sbjct 302 TAGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAGG 243 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| |||||| ||| | | | | ||||| || ||||| Sbjct 242 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGGACTCCAC 183 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | || ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 182 CTCAAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 132 >seq620935 Length=1758 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| |||||||||||||||| ||| || || |||| || Sbjct 40 CACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCCTC 99 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||| ||||| ||||| || | |||||||||||| | ||| | || |||||||| Sbjct 100 CAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTG 159 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| | | | |||||| ||||| || || | || ||||| || Sbjct 160 GATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTT 219 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||| || || || || || || ||||| || Sbjct 220 CCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 252 >seq726932 Length=530 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| |||||||||| ||| || || |||| || Sbjct 40 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTC 99 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||| || || ||||| || | ||||||||||| | || | || ||||||||| Sbjct 100 CAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 159 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| | | | ||||| |||||| || || | || ||||| || Sbjct 160 GATCTTAGCCTTGACATTGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTCTT 219 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||| || ||||| || ||||| ||||| ||| Sbjct 220 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTTG 253 >seq313781 Length=385 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || || | | | || || |||||||| |||||||| Sbjct 385 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAA 326 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | |||||| || | || | | |||||||||| ||||| |||| | Sbjct 325 GATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATCTTTGCTTTGACATT 266 Query 46522 CGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| ||| ||||| |||| ||||||||| || || ||||| || || Sbjct 265 ATCAATGGTGTCGGAACTC---TCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTT 209 Query 46579 AACAAAGATTTGCAT 46593 || ||||||||||| Sbjct 208 CACGAAGATTTGCAT 194 >seq109077 Length=726 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || || | | | || || |||||||| || ||||| Sbjct 1 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCAGCGAA 60 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||| || | || | | ||||||||| ||||| || | | Sbjct 61 GATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACATT 120 Query 46522 CGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| ||| ||||| |||| ||||||||| || || ||||| || || Sbjct 121 ATCAATGGTGTCGGAACTC---TCCACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTCTT 177 Query 46579 AACAAAGATTTGCAT 46593 || ||||||||||| Sbjct 178 CACGAAGATTTGCAT 192 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || ||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 457 CTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCTTCCAGCTGCTTCCCTGCGAA 516 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || |||||| ||| |||||| || | ||| Sbjct 517 AATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGGATCTTAGCTTTCA-CGT 575 Query 46522 CGCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | || | ||||| ||| || || | || || || || || ||||| ||||||| Sbjct 576 TGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTTTCCGGTCAGAGTTTTAA 635 Query 46581 CAAAGATTTGCATT 46594 |||| || |||||| Sbjct 636 CAAAAATCTGCATT 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559896013935000