Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq681135 226 3e-54 seq736048 132 5e-26 seq750760 120 3e-22 seq726932 118 1e-21 seq620935 109 5e-19 seq313781 93.3 4e-14 >seq681135 Length=1827 Score = 226 bits (250), Expect = 3e-54 Identities = 561/841 (67%), Gaps = 13/841 (2%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || || || ||| | ||||| || || || || ||||||| ||| || || ||| Sbjct 278 TTCTGGTACTCCCCAACCCTCTTCTCGAAGAAGTTGGTCTTTCCCTGCAAAGAGATTAGC 337 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723 ||| | || || || || | |||||| ||| | || | || ||||| Sbjct 338 TCCATCCAGTCGAACGGATTCGAAACGTTGTACATCTTCCCGTAACCCAAGGCGCCGAGC 397 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783 || | ||||| ||||| ||||||||||| ||| | | || | |||| ||| Sbjct 398 AGGCGATCGGCAACGAATTCGATGTATTGACTCATTAGAGCACTGTTCATCCCCACTAGA 457 Query 132784 -CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 ||||| || | ||| ||| || || | || || | |||| ||||| |||||| Sbjct 458 GCGCAC-GGTAACGCGTCGCAGACGAACTCTCTTTCTATATCCACCGAGTCGGCGACGAT 516 Query 132843 TTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAAT-GCTTGAACATCAAGCAAGCAA 132901 | || | || | | || |||| | | | | || | | || | | |||||| || | Sbjct 517 TGCCTTCACTCTCTCCTCGCTTAGTTTATTC-CTAAGTAGGCTGTAGAGCAAGCACGCGA 575 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961 | ||||| || ||||||||||| | || || | || || |||||| || || |||| Sbjct 576 AATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCA 635 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 |||| |||||||| || ||||| ||||| | | ||| || || || ||||||| ||| | Sbjct 636 TGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTT 695 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGC 133081 | ||| ||||| || | |||||| ||| | || || ||| || | ||||||| | Sbjct 696 CCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGT---TTCGGAGCCGTCGATCCATC 752 Query 133082 GCAGCGCCCATTCGGCCTTTTCTTTGACGCAC--GGCATCGTTTCGATGGCGTTCAACAA 133139 | || ||||| | ||| |||||| | | ||| || || || ||||| |||| || | Sbjct 753 GGAGAGCCCACTGGGC--TTTCTTCGCCACACAGGGGATGGTATCGATTGCGTGAAAGAG 810 Query 133140 ACGGAGTTTCTC-TTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCG 133198 | | |||||| || || | | || | || | | ||||| || | Sbjct 811 CCTGTTTTTCTCCTTTGGATCCTTG-ATATACGATTCTAACAACAGACTGTACATCTCAG 869 Query 133199 AGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCA 133258 |||| | ||| || ||||| || ||||| || || ||| || |||||| ||||| | Sbjct 870 AGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGAGACCTGGA 929 Query 133259 CTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAA 133318 | || | ||| | || | ||||||||| |||||| ||||| |||||||| | Sbjct 930 CCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATTCCGTCAGAAGCGGCGAAGA 989 Query 133319 AGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCG 133378 |||| || | || ||||||| || ||||| | | | | | ||||| | ||| Sbjct 990 AGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGGTTTTCCCATTGACGCT 1049 Query 133379 TGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACA 133438 ||||| || ||||| || |||||| |||||||||||||||||||||| || ||||||| Sbjct 1050 GGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCTCGGCCTTCTTGTACA 1109 Query 133439 T 133439 | Sbjct 1110 T 1110 >seq736048 Length=1016 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || ||||| || ||| | || || ||| | Sbjct 635 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATTACCCTTGAAGTTGAGAGTTCA 576 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||||||| ||||| ||||| |||||| | ||||| Sbjct 575 GACACCATCGATAATGTGAAAGCTAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 516 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || || ||||||||||| || | || || | ||||||||| Sbjct 515 CAGAGGCTCATATTTGCTGGTAAACAGCTGGAAGATGGTCGGACATTGGCGGACTACAAC 456 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || || ||||| || ||||||||||| ||| Sbjct 455 ATCCAGAAGGAATCTACCCTTCACTTGGTTCTCCGTTTGAGAGGTGGC 408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || || || || || ||||| |||||| | || || ||| | Sbjct 407 ATGCAAATATTTGTGAAGACCCTTACTGGTAAAACTATCACCCTTGAGGTTGAGAGTTCA 348 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| |||||||| ||||| || || ||||| ||||||| Sbjct 347 GACACCATCGACAATGTGAAAGCAAAAATCCAGGACAAGGAAGGTATTCCACCCGACCAG 288 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || ||||| || || | || || | |||||||| Sbjct 287 CAGAGGCTAATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACTACAAT 228 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 || || |||||| | || || || Sbjct 227 ATACAGAAGGAATCAACCCTTCA 205 >seq750760 Length=1299 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| || ||||| || ||||| ||| | || || ||| || Sbjct 132 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTTGAGGTGGAGTCC 191 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || ||||| | ||| Sbjct 192 TCTGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGAC 251 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || ||||| | ||| || || ||||| || |||| || ||||| |||||| Sbjct 252 CAGCAACGCCTCATATTCGCCGGGAAGCAGCTCGAGGACGGCCGGACCCTAGCTGACTAC 311 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || || || |||||||| || | ||||| ||| Sbjct 312 AACATCCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGCCTCAGAGGTGGC 362 >seq726932 Length=530 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| || ||||| || ||||| ||| | || || || | Sbjct 252 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCG 193 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || || || | ||| Sbjct 192 TCTGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 133 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | ||| || ||||||||||| |||| || ||||| ||||||| Sbjct 132 CAGCAGCGTCTCATCTTCGCTGGAAAACAGCTGGAGGACGGCCGAACCCTAGCCGACTAC 73 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| |||| || || ||||||| || Sbjct 72 AACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCG 35 >seq620935 Length=1758 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || ||||| ||| | || || || | Sbjct 252 AAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCA 193 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-A 38359 | |||| | | | | || | || |||| ||||| || || || ||||||| | Sbjct 192 TCTGACACGATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCAT-CCCGCCGGA 134 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | ||| |||||||||||||| |||| || ||||| |||||| Sbjct 133 CCAGCAGCGCCTCATCTTCGCTGGCAAACAGCTGGAGGACGGCCGAACCCTAGCCGACTA 74 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| ||||| ||||| | || || || ||||||| || Sbjct 73 CAATATCCAGAAGGAGTCAACCCTCCACCTGGTGCTCCG 35 >seq313781 Length=385 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || |||||||| | || || ||| || Sbjct 194 ATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATCACGCTGGAGGTGGAGAGTTCC 253 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||| || | ||||| ||||| || || | || || Sbjct 254 GACACCATTGATAATGTCAAAGCAAAGATTCAGGACAAGGAGGGGATCCCACCGGATCAG 313 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| || || |||||||| || | | | ||||| ||||||||| Sbjct 314 CAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAAGATGGGAGGACCCTGGCGGACTACAAC 373 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 374 ATCCAGAAGGA 384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495445385520000