Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq686278 129 7e-25 seq242768 100 3e-16 seq5092 98.7 1e-15 seq681135 95.1 1e-14 seq728136 91.5 2e-13 >seq686278 Length=2433 Score = 129 bits (142), Expect = 7e-25 Identities = 311/463 (67%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||| || || | | || || || || || |||| ||||| |||||| || ||| Sbjct 556 TCAAGAATGTCTGCCCTGTTAGTGGCTGCAATAACAATTATACCAGTGTTTCCTT--CAA 613 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 |||||||||| || |||||||| ||||||| ||||||||||| ||||||||| || | Sbjct 614 AACCATCCATTTCAGTCAAAAGCTGGTTAAGAGTTTGTTCCCTTTCATCATTTCCT--CC 671 Query 9343 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | | |||| | | ||| || || |||||||| ||||||| || ||||| || Sbjct 672 TCCAATTCCAGTTCCTCTTTGGCGCCCAACAGCATCAATTTCATCAACAAATACAATGCA 731 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || ||| || ||| | | || ||||| || || || || || |||||||| Sbjct 732 GGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCACGGACTCTAGATGCACCAACACCAAC 791 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | || | || || || ||| | |||||| | Sbjct 792 AAACATCTCAACAAACTCAGAACCTG-AGATAGAGAAAAATGGAACACCTGCTTCACCAG 850 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 |||| || || || |||||||| || || ||||| || | || || |||| Sbjct 851 CAATTGCCTTAGCTAGCAGAGTCTTCCCAGTTCCTGGAGGGCCAACAAGAAGAACACCTT 910 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 ||||| || ||| | || | ||||||| || | || ||||| ||||| | Sbjct 911 TAGGAATGCGAGCTCCAACTGCAGTGAATCTCTCGGGCTTTTTCAGAAACTCCACTA--- 967 Query 9640 CTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 ||||| || || | ||| || | || | ||| ||||||| Sbjct 968 CTTCCATGAAATCTTGTTTTGCTTCATCTACCCCAGCAACATC 1010 >seq242768 Length=840 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || || ||||||||||||||||| ||||| || ||||| | |||||||| | Sbjct 599 GGTAGAGCAATTGATGCCAAATTGCATACAGCAGTTTCATCGGCACTGGTGTACTCAATG 540 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || ||||| ||||| ||| ||||| || |||| ||||| ||| ||||| ||||| Sbjct 539 ATCTCAGTACATAAGTTTGAAGATTTAATGGTACCCAGATTCTGTTGATTACTTTTTTTA 480 Query 106577 TTGCACGCATCCT 106589 ||||| | ||||| Sbjct 479 TTGCAAGAATCCT 467 >seq5092 Length=1596 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| || |||||||| || || |||| || ||| ||||| || || Sbjct 860 TGGGGCCTTGGTGTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGA 801 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 ||||| | |||||| | | ||||||||||||| ||| ||| || || | | Sbjct 800 GACATTAAATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATTCCAACAGAA 741 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 107347 || | ||| ||||||| || || |||| | | | || | | | | |||||| Sbjct 740 ACTCTCATCAACATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGATAG 681 Query 107348 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | ||||||||||||||| |||||||||| || | ||| ||||||| Sbjct 680 GACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCG 634 >seq681135 Length=1827 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| ||||| || || | ||||||||||| || || ||||||||||| || ||| Sbjct 590 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 649 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | |||||| |||||||||||||| || ||||| || || || Sbjct 650 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 709 Query 117412 GCAAAAAGGCGCTCGGCGAAGG 117433 || | ||||| ||||| |||| Sbjct 710 GCGAGCAGGCGTTCGGCAAAGG 731 >seq728136 Length=2057 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/280 (67%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||||||||| || || || || ||||| || | ||||||||| | Sbjct 1814 AATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACCT 1755 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | ||| || | | ||| | ||||| |||||||| ||||||||||| ||||| || Sbjct 1754 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 1695 Query 9402 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || |||||||| || | ||||| | || || || || || ||||| | Sbjct 1694 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 1640 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 | ||||||| || || || | | ||| | || || ||| || ||| | ||| | Sbjct 1639 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 1580 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || | |||| ||| || || ||||| || || || || Sbjct 1579 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGG 1540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584404559595000