Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq551508 277 2e-69 seq516297 259 5e-64 seq616439 163 3e-35 seq545415 156 5e-33 seq717558 125 8e-24 seq161073 111 2e-19 seq493281 100 3e-16 seq753951 98.7 1e-15 seq711014 89.7 6e-13 >seq551508 Length=510 Score = 277 bits (306), Expect = 2e-69 Identities = 357/493 (72%), Gaps = 0/493 (0%) Strand=Plus/Plus Query 168818 TACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTT 168877 ||||||||| | |||||||| | | | | || | |||| | |||||||| |||| Sbjct 18 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGTT 77 Query 168878 GCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAG 168937 || |||||||| || || | || || ||| | ||| | | |||||| ||||||| Sbjct 78 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAA 137 Query 168938 GGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTA 168997 || || | ||||||||||||||||| ||| ||||| || |||||||||||| | ||| Sbjct 138 GGAAGCTTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGTA 197 Query 168998 TTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATG 169057 ||||| | ||||||||||| |||||||| || ||||| ||| || ||||| ||| | Sbjct 198 TTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGTA 257 Query 169058 TTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGA 169117 ||||| || || |||||| || ||||||||||| | ||||| ||| | | || || Sbjct 258 TTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAGG 317 Query 169118 GAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACC 169177 || || || | | |||||| || |||||||| ||||||||||| |||||||| Sbjct 318 GAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAACT 377 Query 169178 TATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTC 169237 ||||||||||| || || | || || || || |||| || ||||| ||||| |||||| Sbjct 378 TATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTTC 437 Query 169238 AACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTA 169297 || || ||| | | | | ||||||||||| | | || || ||| || | ||||| Sbjct 438 AATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 497 Query 169298 ACCTCTATGGGTA 169310 || || | |||| Sbjct 498 ACTGCTTTAGGTA 510 >seq516297 Length=515 Score = 259 bits (286), Expect = 5e-64 Identities = 367/515 (71%), Gaps = 1/515 (0%) Strand=Plus/Minus Query 168947 TCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCA 169006 ||||||||||||||||||||||| ||||| || |||||||||||| | |||||| | || Sbjct 515 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCT 456 Query 169007 GAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGA 169066 ||||||||||| |||||||| | ||||| ||| | | ||| ||| | || ||||| Sbjct 455 GAGCACAACATCCTTATGCACTCATTCCACATGTTGGCA-TAGTTGGTGTATTTGGTGGT 397 Query 169067 TCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACT 169126 || |||||| | |||||||||||| | ||||| ||| | | || || || || | Sbjct 396 TCCCTATTCAGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATA 337 Query 169127 GAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATT 169186 || | |||||| ||| ||||||| |||| |||||| |||||||| ||||||||| Sbjct 336 GAAAATGAATCTGCGAATGTAGGTTACACATTCGATCAAGATGAAGAAACTTATAATATT 277 Query 169187 GTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCA 169246 || || ||||| || | ||| |||| || ||||| ||||| | ||||| || || Sbjct 276 ACGGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTCT 217 Query 169247 AGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATG 169306 | | | || |||||||||| | | || | ||| || | ||||| | || | Sbjct 216 CGTTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTTA 157 Query 169307 GGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT 169366 |||||| || || | ||| || | || || || || || |||||||| | || ||| Sbjct 156 GGTATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGAT 97 Query 169367 GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATG 169426 | | ||| | ||| ||| | || ||| | | || | || |||||||||||| Sbjct 96 AGTCAAGGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGTATG 37 Query 169427 GAAGTAATGCATGAGCGTAACGCTCACAACTTCCC 169461 ||||| |||||||| ||||| ||||| || ||||| Sbjct 36 GAAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq616439 Length=1776 Score = 163 bits (180), Expect = 3e-35 Identities = 212/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 168944 TTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAA 169003 |||| ||||| ||||||| ||||||| ||| | || |||||||||||| | |||||| | Sbjct 185 TTCTATGATGATATGCCTTTAGGAATCTCTAGTACTTTCAACTTCATGATTGTATTCTAG 244 Query 169004 GCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGT 169063 | ||||||||||| |||||||| | ||||| || ||| |||| ||| | || | | Sbjct 245 GTTGAGCACAACATCCTTATGCACCTATTCCACTTGTTAGGTGTAGTTGGTGTATTTGAT 304 Query 169064 GGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACT 169123 | ||| ||||| | |||||||||| | ||||| | | | | |||| || || Sbjct 305 GAGTCTTTATTCAATGTTATGCATGGTTTCTTGGTAACCTTTAGTTTGATCAAGGAAACC 364 Query 169124 ACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAAT 169183 || | | |||| | || || |||||||| |||| |||||| |||||||| |||||| Sbjct 365 ACAAAAAATGAATTTGTTAATTAAGGTTACAAATTCGATCAAGATGAAGAAACTTATAAT 424 Query 169184 ATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTT 169236 || || | || ||||| || || || |||| || || || |||| ||||| Sbjct 425 ATCGTAGTTGCTCATGGTTATTTTAGTCGATTGATTTTTCAATATGGTAGTTT 477 >seq545415 Length=298 Score = 156 bits (172), Expect = 5e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 169157 TTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTA 169216 ||||||||||| |||||||| ||||||||||| || || ||||| || || || |||| Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 169217 ATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTC 169276 |||||| | ||||| |||||| | || || | | | || |||||| |||| | | Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 169277 CCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAAC 169336 | || ||| || | ||||| | || | |||||| | || ||| | |||||| | || Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 169337 GGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGT 169396 || || || ||||||||||| | || ||| | ||| | ||| ||| |||| | Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGGCT 240 Query 169397 GACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCA 169452 || | | ||| | || ||||||||||||||||| |||||||| |||| ||||| Sbjct 241 GATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 296 >seq717558 Length=1667 Score = 125 bits (138), Expect = 8e-24 Identities = 284/424 (67%), Gaps = 6/424 (1%) Strand=Plus/Plus Query 168925 CCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAA 168984 |||| ||||| | | ||| | | ||||| ||||||||| |||| || || || || Sbjct 1008 CCCAATTGGTTAAAGAAATTTTTTTAATGGTTTGCCTCTAGTAATTAGTGCCACTTTTAA 1067 Query 168985 CTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGG 169044 ||||||| | |||||| ||||| | |||||| |||||||| | ||||| ||| | Sbjct 1068 CTTCATGATTGTATTCTAAGCAAAATGCAACATCCTTATGCACTCATTCCACATGTTCGT 1127 Query 169045 AGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATC 169104 ||| ||||| ||||| || || | ||| | ||||||||||| | ||||| | Sbjct 1128 TGTACTTGGTATATTCGGAGGTTCCCCATTTAATGTTATGCATGGTTCTTTGGTAACCTT 1187 Query 169105 TTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCA 169164 | | | || || | || || | | |||| || || | ||||| | || ||||| Sbjct 1188 TAGTTTGAT-AGGGTAACCACAAAAAATGAATATCCTAATGAAGGTTAAATATTTGGTCA 1246 Query 169165 AGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCA 169224 ||| |||||||| |||| |||||| | | |||| || || || |||| | | ||| Sbjct 1247 AGAGGAAGAAACTTATACTATTGTGGTTGATTATGGTTATTTTGGCCGATTGGT-TACCA 1305 Query 169225 GTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTC----CTAGCAGTGTTCCCAG 169280 ||||| |||||||| || ||| | | || |||||| ||||| | | | Sbjct 1306 ATATGCTAGTTTCAATAATTCACATTTTTTACATTTCTTCCCAGCTAGCTACTTGGACTG 1365 Query 169281 TTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGAT 169340 | ||| || | | ||| || || | || ||| | || ||||| |||||| | || || | Sbjct 1366 TAGTAGGTATCTAGTTCACTACTTTAGGCATCAGCACTATGGCTTTCAACCTAAATGGTT 1425 Query 169341 TTAA 169344 | || Sbjct 1426 TCAA 1429 >seq161073 Length=246 Score = 111 bits (122), Expect = 2e-19 Identities = 176/245 (72%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 168749 GATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGA 168808 ||||| |||||||| |||||||| ||||| || | | | | |||| | || | || Sbjct 6 GATGAATGGTTATACAATGGTGGCCCTTATGAGCTAATTGTTCTACACTACTTACTTGGT 65 Query 168809 ATCTCTGCCTACATGGGTAGACAGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTG 168867 | || ||||||||| | ||| |||| ||| | || ||||||||| | ||| Sbjct 66 GTAGCTTTTTACATGGGTCGTGAGTAGGAACTTAGTTTCCAT-CTAGGTATGCACCATTG 124 Query 168868 GATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGC-ATT--TGCAGTATTCCTTGTATA 168924 ||| |||||| |||| ||| || ||| |||||| | | ||| || ||| | | || Sbjct 125 GATTGTTGTTGCATATTTAGCTCC--TAT-TGCAGCTACTACTGCTGTTTTCTTGATCTA 181 Query 168925 CCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAA 168984 |||| ||||| | || || ||||||||||||||||||||||| ||||| || ||||| Sbjct 182 CCCAATTGGTTAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAA 241 Query 168985 CTTCA 168989 ||||| Sbjct 242 CTTCA 246 >seq493281 Length=200 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 168635 GAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCA 168694 |||||||| | || ||||| | ||||||||||| || ||||| ||||| | |||| Sbjct 199 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCCT 140 Query 168695 TCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAG 168754 |||| || || ||| | ||||| |||||||| | ||||||| | | | ||||| Sbjct 139 ACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATGAA 80 Query 168755 TGGTTATATAATGGTGGTCCTTA 168777 |||||||| |||||||||||||| Sbjct 79 TGGTTATACAATGGTGGTCCTTA 57 >seq753951 Length=5828 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 168944 TTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAA 169003 || ||| |||||||| |||||||| ||||||| || |||||||||||| | |||||||| Sbjct 1666 TTTTCTAATGGTATGTCTCTAGGACTTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 1607 Query 169004 GCAGAGCACAACATTCTTATGCATCCCTTCCA 169035 || ||| ||| ||||| |||||| || ||||| Sbjct 1606 GCTGAGTACATCATTCCTATGCACCCATTCCA 1575 >seq711014 Length=229 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 168961 TCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCT 169020 ||||||||| ||||| || ||||||||||| | |||||||| || ||||||||||| || Sbjct 145 TCTAGGAATCTCTGGTACCTTCAACTTCATTATTGTATTCCAGGCTGAGCACAACATCCT 204 Query 169021 TATGCATCCCTTCCATATG 169039 |||||| || ||||| ||| Sbjct 205 TATGCACCCATTCCACATG 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559106744940000