Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq551508 223 4e-53 seq516297 217 2e-51 seq545415 150 2e-31 seq493281 113 5e-20 seq161073 102 9e-17 seq569857 93.3 5e-14 seq673458 89.7 6e-13 seq345357 89.7 6e-13 seq86712 89.7 6e-13 seq663958 86.0 7e-12 seq589273 82.4 9e-11 seq433836 82.4 9e-11 >seq551508 Length=510 Score = 223 bits (246), Expect = 4e-53 Identities = 345/493 (70%), Gaps = 0/493 (0%) Strand=Plus/Plus Query 172147 TACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTA 172206 |||||||| | |||||||||| | | | | | |||| | || ||||| ||| Sbjct 18 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGTT 77 Query 172207 GCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAG 172266 ||||||||||| ||||| |||| || |||| | ||| | | || ||| | ||||| Sbjct 78 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAA 137 Query 172267 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTG 172326 || || | |||||||||||| |||| ||||| ||||| |||||||| ||| | || Sbjct 138 GGAAGCTTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGTA 197 Query 172327 TTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATG 172386 ||||| | ||||| ||||| || ||||| || ||||||||| || ||||| || | Sbjct 198 TTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGTA 257 Query 172387 TTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGA 172446 || || || || ||||| ||| ||||| ||||| || || || ||| | | || || Sbjct 258 TTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAGG 317 Query 172447 GAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACA 172506 || || || || ||||| || || ||||| ||||| ||||| |||||||| Sbjct 318 GAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAACT 377 Query 172507 TACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTC 172566 || || || || || || | ||||| ||||| || | || ||||| |||||| |||| Sbjct 378 TATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTTC 437 Query 172567 AACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTA 172626 || || ||| | | | | ||||||||||| | || ||||| ||| || | ||||| Sbjct 438 AATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 497 Query 172627 ACCTCTATGGGTA 172639 || || | |||| Sbjct 498 ACTGCTTTAGGTA 510 >seq516297 Length=515 Score = 217 bits (240), Expect = 2e-51 Identities = 358/515 (70%), Gaps = 1/515 (0%) Strand=Plus/Minus Query 172276 TCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCA 172335 |||||||||||||| ||||| ||||| ||||| |||||||| ||| | || ||| | || Sbjct 515 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCT 456 Query 172336 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGA 172395 ||||| ||||| || ||||| | ||||||||| | | ||| || | ||||| || Sbjct 455 GAGCACAACATCCTTATGCACTCATTCCACATGTTGGCA-TAGTTGGTGTATTTGGTGGT 397 Query 172396 TCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACT 172455 || ||||| | ||||| ||||| || || || ||| | | || || || || | Sbjct 396 TCCCTATTCAGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATA 337 Query 172456 GAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATA 172515 ||| ||||| ||| || |||| |||| ||||| |||||||| || || || Sbjct 336 GAAAATGAATCTGCGAATGTAGGTTACACATTCGATCAAGATGAAGAAACTTATAATATT 277 Query 172516 GTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCA 172575 || || || ||||| | |||||| | || ||||| |||||| ||||| || || Sbjct 276 ACGGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTCT 217 Query 172576 AGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATG 172635 | | | || |||||||||| | || ||| | ||| || | ||||| | || | Sbjct 216 CGTTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTTA 157 Query 172636 GGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT 172695 |||||| || || | ||| |||| || |||||||| ||||||||||| | || ||| Sbjct 156 GGTATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGAT 97 Query 172696 GCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATG 172755 | | ||| | || ||| | || ||| || | || | || ||||| |||||| Sbjct 96 AGTCAAGGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGTATG 37 Query 172756 GAAGTTATGCATGAAAGAAATGCACACAACTTCCC 172790 ||||||||||||||| | ||||| || || ||||| Sbjct 36 GAAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq545415 Length=298 Score = 150 bits (166), Expect = 2e-31 Identities = 213/297 (72%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 172486 TTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTT 172545 ||||| ||||| |||||||| || || || || || || || ||||| ||||| | | Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 172546 ATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTC 172605 |||||| | |||||| |||| | || || | | | || |||||| |||| | || Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 172606 CCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAAC 172665 | ||| ||| || | ||||| | || | |||||| | || ||| | |||||||| || Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 172666 GGTTTCAACTTCAACCAATCAGTTGTAGAT-GCTAACGGTAAGATTGTTCCTACATGGGG 172724 |||||||| || |||||||| | || ||| || || ||| | || ||| |||| Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAA-GGTCGTGTAATTAATACTTGGGC 239 Query 172725 TGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACA 172781 ||| || | ||| | || ||||| ||||||||||||||||||||| | ||||| || Sbjct 240 TGATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 296 >seq493281 Length=200 Score = 113 bits (124), Expect = 5e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171964 GAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCA 172023 ||||| ||| | || ||| | | ||||| ||||| || ||||||||||| | |||| Sbjct 199 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCCT 140 Query 172024 TCATCAAACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAA 172083 | || || |||||| | ||||| ||||| || | ||||||| || |||| |||||| Sbjct 139 ACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATGAA 80 Query 172084 TGGTTGTACAATGGTGGTCCTTATCAG 172110 ||||| |||||||||||||||||| || Sbjct 79 TGGTTATACAATGGTGGTCCTTATAAG 53 >seq161073 Length=246 Score = 102 bits (112), Expect = 9e-17 Identities = 171/245 (70%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 172073 CCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTA 172132 |||| ||||||||||| ||||||||||| |||||| || | | | | |||| | | Sbjct 1 CCGTTGATGAATGGTTATACAATGGTGGCCCTTATGAGCTAATTGTTCTACACTACTTAC 60 Query 172133 TCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGAC 172192 | ||| | | |||||||| | ||| |||||| | | |||||||| || Sbjct 61 TTGGTGTAGCTTTTTACATGGGTCGTGAGTAGGAACTTAGTTTCCATCTAGGTATGC-AC 119 Query 172193 CAT-GGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTG 172251 ||| |||| ||| ||||||| ||| ||| | |||| | |||||| ||| | | Sbjct 120 CATTGGATTGTTGTTGCATATTTAGCTCCTATTGCAGCTACTACTGCTGTTTTCTTGATC 179 Query 172252 TATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTC 172311 || ||| | ||| | || || |||||||||||||| ||||| ||||| ||||| ||| Sbjct 180 TACCCAATTGGTTAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTC 239 Query 172312 AACTT 172316 ||||| Sbjct 240 AACTT 244 >seq569857 Length=335 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || |||| |||| |||| ||| || | |||||| || | || |||||| || Sbjct 173 TTTGATATTATTGATGACTAGTTATGGAGGGAACATTTCGTTTTTGTTGGTTGGTCTAGT 232 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || || || | || ||||||||| | | || ||| | Sbjct 233 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTGGGGGGTTGGTTCACAAGTACAACCCTT 292 Query 173071 GTTACATCATGGTATACACATGGTATTG 173098 || || ||||||||||| ||||| |||| Sbjct 293 GTAACTTCATGGTATACCCATGG-ATTG 319 >seq673458 Length=2461 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 159663 ACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACA 159722 |||||| ||||| ||| ||| || ||| || ||||| || ||||| || | || Sbjct 1400 ACAGGTGGGTCTCACAAGCCCAGGTTGGATTGGAGCTGATGTTTGCCATCTCAATCTCCA 1341 Query 159723 TAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGC 159782 || ||||| || ||||| ||||| || || |||||||| | |||||||||||||| Sbjct 1340 CAAAACATTTTGCATTCCCCATGGTGGAGGTGGTCCTGGGATGGGTCCTATTGGTGTGAA 1281 Query 159783 AAAACATCTCACACCATTT 159801 |||||| || |||||||| Sbjct 1280 AAAACACCTGGCACCATTT 1262 >seq345357 Length=322 Score = 89.7 bits (98), Expect = 6e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 173381 TAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAA 173440 |||| || |||||||| ||| |||||||||| | ||| || ||| | ||| | | Sbjct 235 TAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGTGCCTAGTTTTGGTATAGCATCTA 176 Query 173441 TCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACA 173500 | ||| | | ||| | || | ||||| || || || |||||||| |||||||| | Sbjct 175 TATTTTGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 116 Query 173501 TGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAG 173560 ||||||| |||| || || | || | || | ||||| || ||||||||||| || | Sbjct 115 TGATGGGAGTTGTCGGTGTATTGGGCGTTGCTCTGCTATGCGCTATTCATGGTGCTACCG 56 Query 173561 TGCAGAACACATTGTATGAAGA 173582 | | || || || | |||||| Sbjct 55 TTGAAAATACTTTATTTGAAGA 34 >seq86712 Length=407 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 173842 GCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGT 173901 ||||| |||||||| || || |||||||||||||| || ||||| || | ||||||||| Sbjct 2 GCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGT 61 Query 173902 ATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAA 173961 || | || |||||| | || |||||| | ||||| ||| | |||| || | || Sbjct 62 ATTCGTGCTTGGATGGCGGCTCAAGATCAGCTTCATGAAAACCTTATATTCCCTAAGGAG 121 Query 173962 GTGTTACCAAGAGGTAACGCACTTTAA 173988 || |||| | || || || |||||| Sbjct 122 GTTCTACCTCGTGGAAATGCTCTTTAA 148 >seq663958 Length=4725 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || ||||| || | ||||||||||| || ||||| ||||| || || Sbjct 3856 TGGAGCAGATGTCTGCCATCTTAATCTTCATAAGACATTTTGCATTCCCCATGGTGGAGG 3915 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTTGTA 159804 ||||| ||| | ||||| |||||||| ||||| | |||||||| || Sbjct 3916 TGGTCCGGGCATGGGTCCCATTGGTGTGAAGAAACACTTGGCACCATTTCTA 3967 >seq589273 Length=208 Score = 82.4 bits (90), Expect = 9e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 4 ACCGCTAACTGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTA 63 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | | | | |||| | | || | || Sbjct 64 CATTTCTTTATGTTATTTGTACCAGTAACCGATTTATGGATGAGTGCTTTTGGAGTAGTC 123 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 ||||| || | ||| | | || || |||||||| || || || || | ||||| ||| Sbjct 124 GGTCTGGCTTTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAA 183 Query 173851 GATCCAGAGTTCGAGACTTTCTACA 173875 ||||| || || ||||||||||||| Sbjct 184 GATCCTGAATTTGAGACTTTCTACA 208 >seq433836 Length=281 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 172033 GCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTAC 172092 || |||||| | ||||| ||||| || ||||||||| || || ||||||||||| ||| Sbjct 96 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCAACATTTGTTGATGAATGGTTATAC 37 Query 172093 AATGGTGGTCCTTATCAG 172110 ||||||||||||||| || Sbjct 36 AATGGTGGTCCTTATGAG 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582493197330000