Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq736048 113 3e-20 seq620935 102 5e-17 seq750760 98.7 6e-16 seq726932 98.7 6e-16 seq109077 98.7 6e-16 seq702768 91.5 9e-14 seq689433 91.5 9e-14 seq313781 86.0 4e-12 >seq736048 Length=1016 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | | ||||||||||| || ||| ||||| ||||| ||||||| Sbjct 409 CCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGCC 468 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| ||||||||||| || |||||||| || | ||||||||| | || Sbjct 469 AATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGA 528 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||||||||||| || || ||| || || ||||||| || ||| Sbjct 529 ATACCCTCCTTGTCCTGGATTTTAGCTTTCAC--AT--TATCGATGGTGTCTGAACTCTC 584 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | ||| || |||||||| ||||| ||||||||||| || ||||| Sbjct 585 AACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 635 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| |||||||| |||||||| || | | | || |||| || Sbjct 654 AACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCCAATGTCCGGCCATCCTC 713 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || |||||||| || | ||||||||| | || | ||||||||||| Sbjct 714 GAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 773 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 || || |||||| || |||| || || | |||||| || | ||| || | Sbjct 774 GATTTTTGCTTTGAC--AT--TATCAATGGTGTCTGAGCTCTCAACTTCAAGGGTGATAG 829 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||||| ||||| ||||||||||| || ||||| Sbjct 830 TTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 863 >seq620935 Length=1758 Score = 102 bits (112), Expect = 5e-17 Identities = 144/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| | ||| |||| | || ||||||||||| || || || Sbjct 59 TCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTGCCAGCGAAG 118 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | || |||||||| ||||| ||||| || Sbjct 119 ATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--AT 176 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| ||| | ||||| || | ||||||||| || ||||| || ||||| Sbjct 177 --TATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTCTT 234 Query 34967 CACAAAGATCTGCATATTCG 34986 ||| || |||||||| |||| Sbjct 235 CACGAAAATCTGCATCTTCG 254 >seq750760 Length=1299 Score = 98.7 bits (108), Expect = 6e-16 Identities = 154/218 (71%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| | ||| | || | || || Sbjct 343 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTCCGGCCGTCCTCG 284 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| ||||| || ||||||||||| | || | || |||||||| Sbjct 283 AGCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 224 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || || || | ||||| ||| || ||| || || | ||||||||| Sbjct 223 ATCTTGGCCTTCAC--AT--TGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTTATGGT 168 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 || ||||| || || ||||| ||||||||||| |||| Sbjct 167 CTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTCG 130 >seq726932 Length=530 Score = 98.7 bits (108), Expect = 6e-16 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| |||| | || |||||||||||||| || || Sbjct 59 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCAGCGAAG 118 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || |||||||| ||||| ||||| || Sbjct 119 ATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGAC--AT 176 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| | ||||| || | ||||||||| || ||||| || || || Sbjct 177 --TGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTT 234 Query 34967 CACAAAGATCTGCATATT 34984 ||| ||||||||||| || Sbjct 235 CACGAAGATCTGCATCTT 252 >seq109077 Length=726 Score = 98.7 bits (108), Expect = 6e-16 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || |||||||||||||| || || | ||| |||| |||| || Sbjct 212 ACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTTCGCCCATCCTCA 271 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || | | |||||||| | || | |||||||||||| | Sbjct 272 AGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGA 331 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGT 34948 |||||| ||| || || | ||||| | ||| || |||||| || | ||| || || Sbjct 332 ATCTTCGCTTTCAC--AT--TGTCGATGGTATCCGAGCTCTCAACCTCTAAGGTAATTGT 387 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | ||||||||| ||||||||||| Sbjct 388 CTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 420 >seq702768 Length=508 Score = 91.5 bits (100), Expect = 9e-14 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||||||||| || || | ||| | || |||| || Sbjct 310 AACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTC 251 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||| || || ||||| || || | ||||| ||| | || | ||| |||||||| Sbjct 250 CAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTG 191 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || || || |||| | || | |||||| || | || || || || Sbjct 190 AATTTTTGCCTTCACATTATCTATAGTGTCTGAGCTCTCAACCTCTAGTGTAATTGTCTT 131 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| || ||||||||||| |||||||| Sbjct 130 TCCCGTCAGGGTCTTCACAAATATCTGCAT 101 >seq689433 Length=414 Score = 91.5 bits (100), Expect = 9e-14 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||||||||| || || | ||| | || |||| ||| Sbjct 230 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACCATCCTCC 171 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || || || || || | ||||| ||| | || | |||||||||||| | Sbjct 170 AACTGCTTCCCTGCGAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGA 111 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || || |||| | || | ||| || || | || || || ||| Sbjct 110 ATTTTGGCCTTCACATTATCTATGGTATCTGAGCTCTCCACCTCTAGTGTGATCGTCTTT 51 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||||||||| ||||||||| Sbjct 50 CCCGTCAGGGTCTTCACAAATATCTGCATA 21 >seq313781 Length=385 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| ||| | | |||| |||||||| || ||||| || Sbjct 384 TCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAAG 325 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | |||||||||||| |||||| |||||| || Sbjct 324 ATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATCTTTGCTTTGAC--AT 267 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| || || ||| || || | || ||||| ||||| || || ||||| Sbjct 266 --TATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTT 209 Query 34967 CACAAAGATCTGCATA 34982 ||| ||||| |||||| Sbjct 208 CACGAAGATTTGCATA 193 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||||||||| || || | ||| |||| |||| || Sbjct 174 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGCCCATCCTCA 115 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || |||| ||||||||| | || | ||| |||||||| | Sbjct 114 AGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGA 55 Query 34893 ATCTTCTGTTTGACG 34907 |||||| ||| ||| Sbjct 54 ATCTTCGCTTTCACG 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321642012609000