Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq551508 304 1e-77 seq516297 298 6e-76 seq545415 178 1e-39 seq616439 156 5e-33 seq717558 129 7e-25 seq161073 120 3e-22 seq666543 111 2e-19 seq493281 109 6e-19 seq455454 84.2 2e-11 >seq551508 Length=510 Score = 304 bits (336), Expect = 1e-77 Identities = 371/506 (73%), Gaps = 0/506 (0%) Strand=Plus/Minus Query 84137 ACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGA 84196 ||| | ||||| ||||| || || || || ||||||||||| | ||| || | | ||| Sbjct 509 ACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATTTAAAGA 450 Query 84197 ACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGC 84256 || ||| ||||| |||||| ||||| || | || || || || || ||||||| Sbjct 449 ACATGAATTATTGAAACTAGCATATTGGAATATCAATCGGCCAAAATAACCTGGAGCAGC 390 Query 84257 AACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATT 84316 ||||||||||||||||| || ||||||||||| |||||||| || || |||| Sbjct 389 CACAATATTATAAGTTTCTTCCTCTTGACCGAATTTGTAACCTGCATTAGCAGATTCATT 330 Query 84317 TTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAG 84376 || ||| ||||| | || | | ||| || || | ||||||||||| || |||||| Sbjct 329 TTTTGTGGTTTCCCTTATCAAACTAGAGGTTACCAAGGAACCATGCATAGCTCTGAATAG 270 Query 84377 AGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATG 84436 | || |||||||||||||| || | |||||||| || || |||||||||||||| || Sbjct 269 GGAACCGCCGAATACACCAGCTACATCTAACATGTGGAATGGGTGCATAAGGATGTTGTG 210 Query 84437 TTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATC 84496 || ||||||| |||| |||| ||||||| || || ||||| | || ||||| ||||| Sbjct 209 CTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATC 150 Query 84497 AGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGG 84556 | | || ||||| || | || || | | ||| | ||||| || |||||||| || Sbjct 149 ATAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGG 90 Query 84557 AGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTC 84616 ||| || || |||||| ||||| || |||||| | ||||| | ||||||||| || Sbjct 89 AGCTGAATATGCAACAACAATCCAAGGGCGCATAGCCAGACGGAAACTAAGTTCCCACTC 30 Query 84617 ACGACCCATGTAAGCAAATGCACCAA 84642 ||||||||||||| | | |||||| Sbjct 29 ACGACCCATGTAACAAGCTACACCAA 4 >seq516297 Length=515 Score = 298 bits (330), Expect = 6e-76 Identities = 378/516 (73%), Gaps = 3/516 (1%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| ||||| || |||||||| ||||| |||||||||||||| |||||||| | Sbjct 2 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTTATA 61 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||| | ||||| | |||| ||| ||||| || | | || ||||| || Sbjct 62 ATATCAGCCTAAGTATTAATTACACAACCTTGACTATCAACTATAGATTGGTTGAAATTG 121 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || | || | || ||| | | ||| | |||| ||||| || || || Sbjct 122 AAACCATTTAGGTAGAAAGTCAGAGTGTTGATACCTAAAGCAATGAACCAGATACCTACT 181 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 | ||||||||| | | ||| || || | ||||||| ||| ||||| |||||| ||| Sbjct 182 ATAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGAGAATTATTGAATATAGCATATTGG 241 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 || || | ||||| | || || |||||||| ||||||||||||||| || |||||| Sbjct 242 AAAATCAATCGACCAGAATAACCATGAGCAGCCGTAATATTATAAGTTTCTTCATCTTGA 301 Query 84285 CCGAACTTGTAACCATAGTTTTG-TGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGA 84343 |||| ||||||| || || | || |||||||| | ||||| | || | | ||| Sbjct 302 TCGAATGTGTAACC-TACATTCGCAGATTCATTTTCTATGGTTTCCCTAATCAAACTAGA 360 Query 84344 AGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCC 84403 || || | |||||||||||| || |||||| | ||||| ||||||||| | | | | Sbjct 361 GGTTACCAATGAACCATGCATAACACTGAATAGGGAACCACCAAATACACCAACTA-TGC 419 Query 84404 CAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTT 84463 ||||||||| || | |||||||||||||| || || |||| ||| |||| |||| |||| Sbjct 420 CAACATGTGGAATGAGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATGAAGTT 479 Query 84464 GAACGTTCCTGAGATACCAAGTGGCATGCCATCAGA 84499 ||| || || ||||| || || ||||| |||||||| Sbjct 480 GAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 515 >seq545415 Length=298 Score = 178 bits (196), Expect = 1e-39 Identities = 218/298 (73%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 83992 TATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGG 84051 |||| || |||| ||| ||||| |||||||||||||| ||||| || | | ||| | Sbjct 298 TATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAAAATCAG 239 Query 84052 CCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCAT 84111 |||| ||||| | ||||| ||||||||| || | | || || || || || |||| Sbjct 238 CCCAAGTATTAATTACACGACCTTGGCTATCAACTATAGATTGGTTAAAATTGAAACCAT 179 Query 84112 TCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCC 84171 | || || || | ||| |||| | ||| | |||| ||||| || || || || ||| Sbjct 178 TTAGGTTGAAAGTCATAGTGCCGATACCTAAAGCAATGAACCAGATACCTACTACAAGCC 119 Query 84172 AAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAA 84231 ||||||| | ||| || || | ||||||| ||| | ||| |||||| | |||||| | Sbjct 118 AAGCAGCTATGAAGAAATGTAAAGAACGAGAATTATAGAAACTAGCATATTAGAAGATCA 59 Query 84232 GACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAA 84289 | || || || || |||||||| ||||||||||||||||| || ||||||||||| Sbjct 58 ATCAGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCGAA 1 >seq616439 Length=1776 Score = 156 bits (172), Expect = 5e-33 Identities = 235/334 (70%), Gaps = 0/334 (0%) Strand=Plus/Minus Query 84169 GCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGA 84228 ||||| || | | ||| || || | ||||||| | | | || | |||| || || | Sbjct 518 GCCAAACAACTATGAAGAAATGTAAAGAACGAGAAATATCCAAACTACCATATTGAAAAA 459 Query 84229 TAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGA 84288 | | |||| || || || |||||| | || |||||||||||||| || |||||| ||| Sbjct 458 TCAATCGACTAAAATAACCATGAGCAACTACGATATTATAAGTTTCTTCATCTTGATCGA 399 Query 84289 ACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGA 84348 | |||||||| || || | |||||| ||| ||||| ||| | | | | || | Sbjct 398 ATTTGTAACCTTAATTAACAAATTCATTTTTTGTGGTTTCCTTGATCAAACTAAAGGTTA 339 Query 84349 CAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACA 84408 | | |||||||||| || ||||| || || | ||||||||| | || || |||| Sbjct 338 CCAAGAAACCATGCATAACATTGAATAAAGACTCATCAAATACACCAACTACACCTAACA 279 Query 84409 TGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACG 84468 ||| || | |||||||||||||| || || ||| ||| |||| |||| ||||||| | Sbjct 278 AGTGGAATAGGTGCATAAGGATGTTGTGCTCAACCTAGAATACAATCATGAAGTTGAAAG 219 Query 84469 TTCCTGAGATACCAAGTGGCATGCCATCAGAGAA 84502 | | ||||| || | ||||| ||||| |||| Sbjct 218 TACTAGAGATTCCTAAAGGCATATCATCATAGAA 185 >seq717558 Length=1667 Score = 129 bits (142), Expect = 7e-25 Identities = 388/595 (65%), Gaps = 7/595 (1%) Strand=Plus/Minus Query 84102 TTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCA 84161 || || ||||| || || || ||||| ||||| | || | || || ||| | || || Sbjct 1429 TTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATGCCTAAAGTAGTGAACTAGATACCT 1370 Query 84162 ACCACTGGCCAAGCAGCCAA----GAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGC 84217 || || | ||||| ||| | ||| || || | | || | ||| ||||| ||| Sbjct 1369 ACTACAGTCCAAGTAGCTAGCTGGGAAGAAATGTAAAAAATGTGAATTATTGAAACTAGC 1310 Query 84218 ATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTC 84277 ||| ||| | || || || || || || | | || | |||||| |||||||||| || Sbjct 1309 ATATTGGTAACCAAT-CGGCCAAAATAACCATAATCAACCACAATAGTATAAGTTTCTTC 1251 Query 84278 TTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAG 84337 |||||||| || | ||||| | || | | |||||| ||| ||| | | || | Sbjct 1250 CTCTTGACCAAATATTTAACCTTCATTAGGATATTCATTTTTTGTGGTTACCCT-ATCAA 1192 Query 84338 AGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGC 84397 | | | || || | ||||||||||| || ||| | | || ||||||| |||| Sbjct 1191 ACTAAAGGTTACCAAAGAACCATGCATAACATTAAATGGGGAACCTCCGAATATACCAAG 1132 Query 84398 AACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCAT 84457 || | |||||||| || | |||||||||||||| || || | ||| |||| ||| Sbjct 1131 TACAACGAACATGTGGAATGAGTGCATAAGGATGTTGCATTTTGCTTAGAATACAATCAT 1072 Query 84458 GTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAA 84517 | |||| || || | || | || |||| |||| | | ||| | || || | Sbjct 1071 GAAGTTAAAAGTGGCACTAATTACTAGAGGCAAACCATTAAAAAAATTTCTTTAACCAAT 1012 Query 84518 AGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGAT 84577 || | | | ||| | | ||| | | || ||| || ||| || | |||| | | Sbjct 1011 TGGGCAGATTAAGAAAATAACAGTAGTAGATGTAACAAGA-AAGAATATGTAACAACGTT 953 Query 84578 CCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGC 84637 | | || |||||||| ||| | | ||| | ||| ||||||||||||||| | | Sbjct 952 CTAAGGGCGCATACCTAGATGGAAACTAAGCTTCCACTCACGACCCATGTAACAAGCTAT 893 Query 84638 ACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCAT 84692 ||||| | || || | |||| || | |||| | |||||||| |||| |||| Sbjct 892 ACCAAGTAAAAATTGTAGAACAATTAGCTCATAAAGACCACCATTGTATAACCAT 838 >seq161073 Length=246 Score = 120 bits (132), Expect = 3e-22 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 84457 TGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGA 84516 || ||||||| || || ||||| || || ||||| |||||||| || |||| || | Sbjct 246 TGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTAACCAA 187 Query 84517 AAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGA 84576 || || | | ||| ||||||| | ||||||| ||||| | || |||||| | Sbjct 186 TTGGGTAGATCAAGAAAACAGCAGTAGTAGCTGCAATAGGAGCTAAATATGCAACAACAA 127 Query 84577 TCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATG 84636 |||| | ||||||| ||| | | ||||||| | ||||||||||||||| | | Sbjct 126 TCCAATGGTGCATACCTAGATGGAAACTAAGTTCCTACTCACGACCCATGTAAAAAGCTA 67 Query 84637 CACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGT 84696 |||||| | | |||| | |||| || | |||||| |||||||| |||| |||||| | Sbjct 66 CACCAAGTAAGTAGTGTAGAACAATTAGCTCATAAGGGCCACCATTGTATAACCATTCAT 7 Query 84697 C 84697 | Sbjct 6 C 6 >seq666543 Length=3475 Score = 111 bits (122), Expect = 2e-19 Identities = 182/261 (70%), Gaps = 1/261 (0%) Strand=Plus/Minus Query 84483 AGTGGCATGCCATCAGAGAAAGAA-CCTTGCCCGAAAGGATACACAAGGAATACAGCAGA 84541 || |||||||||| | |||| ||||| || | || || | | ||| ||| ||| Sbjct 2361 AGAGGCATGCCATTGAAAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACAGT 2302 Query 84542 TGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATA 84601 | |||| ||| | ||| || || | |||| ||| | | |||||||| | | | | Sbjct 2301 AGTAGCTGTAACAGAAGCTGAATATGTAACAACAATCTAAAGGCGCATACCCAAATGGAA 2242 Query 84602 TGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAAC 84661 ||||||||| ||||||||||||||| | | ||| || | |||||| | ||||| Sbjct 2241 ACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACTAAATAAGAAGTGTAGGACAAT 2182 Query 84662 AAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGG 84721 || | |||||| ||| |||| |||| | |||| || | | ||| |||||||| || || Sbjct 2181 TAGCTTATAAGGACCATCATTGTATAACTATTCATCAACAGATGCGGCTTCCCATATTGG 2122 Query 84722 ATAGAAATGTAGACCAATAGC 84742 ||| ||||| | || ||||| Sbjct 2121 ATAAAAATGCAAACATATAGC 2101 >seq493281 Length=200 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 84615 TCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGT 84674 ||||||||||||||| | | |||||| | |||||| | |||| || | |||||| Sbjct 3 TCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGA 62 Query 84675 CCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGA 84734 |||||||| |||| |||||| || | || ||||||| | || || || || || | | Sbjct 63 CCACCATTGTATAACCATTCATCAACGGATGTTGCTTCCTATATTGGGTAAAAGTGCAAA 122 Query 84735 CCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGA 84794 || ||||| ||| | |||| | ||||||||| || || |||||||| || | ||| Sbjct 123 CCTATAGCTGCAGAAGTAGGAATGATGGCACCAGAGATAATATTGTTTCCATAAAGTAGA 182 Query 84795 GAACCAGCGACTGGCTCA 84812 || |||| || || ||| Sbjct 183 GATCCAGAAACAGGTTCA 200 >seq455454 Length=251 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 84343 AAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTC 84402 |||| || | ||||| ||||| || |||||| | || ||||||||||| | | | Sbjct 112 AAGTTACCAAGGAACCGTGCATAACACTGAATAGGGAACCGTCGAATACACCAACTAAGC 53 Query 84403 CCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAA 84453 | |||||||| || || |||||||||||||| || || |||||||| |||| Sbjct 52 CTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565874171865000