Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq551508 255 2e-63 seq516297 205 3e-48 seq545415 150 5e-32 seq616439 123 7e-24 seq161073 120 9e-23 seq717558 109 2e-19 seq753951 100 8e-17 seq493281 95.1 4e-15 seq666543 86.0 2e-12 >seq551508 Length=510 Score = 255 bits (282), Expect = 2e-63 Identities = 340/468 (73%), Gaps = 6/468 (1%) Strand=Plus/Minus Query 36165 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGG 36224 || ||||||||||| |||||||||| |||| | |||||| || |||||||| ||| Sbjct 481 ACAGGCCAAGCAGCTAGGAAGAAATTTAAAGAACATGAATTATTGAAACTAGCATATTGG 422 Query 36225 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 36284 || || | || ||||| || || |||| || ||||| ||||| || ||||| ||||| Sbjct 421 AATATCAATCGGCCAAAATAACCTGGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGA 362 Query 36285 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAAT--AAGT-GAG 36341 |||||||| || || || ||||||| || ||||| | || || | ||| Sbjct 361 CCGAATTTGTAACCTGCATTAGCAGATTCATTTTTTGTGGTTTCCCTTATCAAACTAGAG 302 Query 36342 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACA 36401 | || |||| || |||||||| ||||| | || |||||||| || || ||| Sbjct 301 GT--TACCAAGGAA-CCATGCATAGCTCTGAATAGGGAACCGCCGAATACACCAGCTACA 245 Query 36402 CCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAA 36461 | | ||| ||||| || ||||||||||| ||||| || |||| || |||| ||| || Sbjct 244 TCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCATGAAG 185 Query 36462 TTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGG 36521 |||||||| || || || | ||||||||||||||| | || || ||||| |||| ||| Sbjct 184 TTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAAAAGCTTCCTTGACCAATTGGG 125 Query 36522 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCAC 36581 |||| ||||| | |||| || ||||||||||| |||||||| || ||| ||||| Sbjct 124 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAACAATCCAA 65 Query 36582 GGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 36629 || | |||| | || | ||||||||||||| | || |||| |||| Sbjct 64 GGGCGCATAGCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 17 >seq516297 Length=515 Score = 205 bits (226), Expect = 3e-48 Identities = 361/519 (70%), Gaps = 9/519 (2%) Strand=Plus/Plus Query 35985 GGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGA 36044 ||||| || || || ||||| ||||||||||||||||| || | || ||||| || | | Sbjct 2 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTTATA 61 Query 36045 ATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTA 36104 || |||||| |||| | || | || | |||||| | || || ||||| || Sbjct 62 ATATCAGCCTAAGTATTAATTACACAACCTTGACTATCAACTATAGATTGGTTGAAATTG 121 Query 36105 AAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTG 36164 || || || || | |||| || |||| || || | ||| | | ||| || | Sbjct 122 AAACCATTTAGGTAGAAAGTCAGAGTGTTGATACCTAAAGCAATGAACCAGATACCTACT 181 Query 36165 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGG 36224 | ||||||||| | ||||||||||||||| || |||||| || ||||||| ||| Sbjct 182 ATAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGAGAATTATTGAATATAGCATATTGG 241 Query 36225 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 36284 || || | || ||| | || |||||||| || ||| ||||| || ||||| ||||| Sbjct 242 AAAATCAATCGACCAGAATAACCATGAGCAGCCGTAATATTATAAGTTTCTTCATCTTGA 301 Query 36285 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAAT--AAGT-GAG 36341 ||||| | || || ||| ||||||| | | ||||| | ||| || | ||| Sbjct 302 TCGAATGTGTAACCTACATTCGCAGATTCATTTTCTATGGTTTCCCTAATCAAACTAGAG 361 Query 36342 GAAGTAACAA-GACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAAC 36400 | || ||| || || |||||| || ||||| | ||||| ||||| || | | Sbjct 362 G--TTACCAATGA--ACCATGCATAACACTGAATAGGGAACCACCAAATACACCAACTAT 417 Query 36401 ACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAA 36460 || | ||| ||||| | ||||||||||| ||||| || |||| || |||| ||| || Sbjct 418 GCC-AACATGTGGAATGAGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATGAA 476 Query 36461 ATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499 |||||||| || || || || ||||||||||||||||| Sbjct 477 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 515 >seq545415 Length=298 Score = 150 bits (166), Expect = 5e-32 Identities = 211/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 35994 TGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCC 36053 || || |||| ||||||||||||||||| || | || |||||||| | || |||||| Sbjct 296 TGAGCATTACATTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAAAATCAGCC 237 Query 36054 CAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTG 36113 ||||| | || | || | | |||||| | || || || || || || || || Sbjct 236 CAAGTATTAATTACACGACCTTGGCTATCAACTATAGATTGGTTAAAATTGAAACCATTT 177 Query 36114 AGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAA 36173 || || |||| ||||||| || || | ||| | | ||| || | || ||||| Sbjct 176 AGGTTGAAAGTCATAGTGCCGATACCTAAAGCAATGAACCAGATACCTACTACAAGCCAA 117 Query 36174 GCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGAGT 36233 ||||| | ||||||||||||| || ||||| || |||||||| | |||||| | | Sbjct 116 GCAGCTATGAAGAAATGTAAAGAACGAGAATTATAGAAACTAGCATATTAGAAGATCAAT 57 Query 36234 CTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAA 36289 | ||||| || |||||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct 56 CAGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCGAA 1 >seq616439 Length=1776 Score = 123 bits (136), Expect = 7e-24 Identities = 233/339 (69%), Gaps = 4/339 (1%) Strand=Plus/Minus Query 36169 GCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGA 36228 ||||| || | | ||||||||||||| || | ||| || ||| |||| || || | Sbjct 518 GCCAAACAACTATGAAGAAATGTAAAGAACGAGAAATATCCAAACTACCATATTGAAAAA 459 Query 36229 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGA 36288 | | || | ||| || |||||||| | || || ||||| || ||||| ||||| ||| Sbjct 458 TCAATCGACTAAAATAACCATGAGCAACTACGATATTATAAGTTTCTTCATCTTGATCGA 399 Query 36289 ATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAAT--AAGTGAGGAAGT 36346 |||| || || || || | ||||| || ||||| || || | | | | Sbjct 398 ATTTGTAACCTTAATTAACAAATTCATTTTTTGTGGTTTCCTTGATCAAACTAAAGGT-T 340 Query 36347 AACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAG 36406 | ||||| || |||||| || |||||||| || | ||||| || | ||||| | Sbjct 339 ACCAAGAAA-CCATGCATAACATTGAATAAAGACTCATCAAATACACCAACTACACCTAA 281 Query 36407 CATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAA 36466 || ||||| | ||||||||||| ||||| || ||| || |||| ||| || ||||| Sbjct 280 CAAGTGGAATAGGTGCATAAGGATGTTGTGCTCAACCTAGAATACAATCATGAAGTTGAA 221 Query 36467 AGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505 ||| | || || || | ||||||| ||||| |||| || Sbjct 220 AGTACTAGAGATTCCTAAAGGCATATCATCATAGAAGCT 182 >seq161073 Length=246 Score = 120 bits (132), Expect = 9e-23 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 36459 AAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAA 36518 || |||||||| || || || || ||||||||||||||||| || || |||| |||| Sbjct 244 AAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTAACCAATT 185 Query 36519 GGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATC 36578 ||||||| ||||| |||||| | ||||||| ||| ||| |||| || ||| ||| Sbjct 184 GGGTAGATCAAGAAAACAGCAGTAGTAGCTGCAATAGGAGCTAAATATGCAACAACAATC 125 Query 36579 CACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATA 36638 || | ||||||||| ||||||||||| | | || |||| |||| | | | Sbjct 124 CAATGGTGCATACCTAGATGGAAACTAAGTTCCTACTCACGACCCATGTAAAAAGCTACA 65 Query 36639 CCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTC 36697 |||| | |||| | ||||| || | ||| || || || || |||||||| || || Sbjct 64 CCAAGTAAGTAGTGTAGAACAATTAGCTCATAAGGGCCACCATTGTATAACCATTCATC 6 >seq717558 Length=1667 Score = 109 bits (120), Expect = 2e-19 Identities = 383/594 (64%), Gaps = 7/594 (1%) Strand=Plus/Minus Query 36102 TTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAA 36161 || || || || || || |||||||||||| || || | || || | | | || | Sbjct 1429 TTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATGCCTAAAGTAGTGAACTAGATACCT 1370 Query 36162 GTGACGGGCCAAGCAGCCAG----GAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGC 36217 || | ||||| ||| || ||||||||||||| | |||||| || ||||| Sbjct 1369 ACTACAGTCCAAGTAGCTAGCTGGGAAGAAATGTAAAAAATGTGAATTATTGAAACTAGC 1310 Query 36218 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTC 36277 ||| ||| | | | || ||||| || |||| | | | ||||| |||| || ||||| Sbjct 1309 ATATTGGTA-ACCAATCGGCCAAAATAACCATAATCAACCACAATAGTATAAGTTTCTTC 1251 Query 36278 TTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAG 36337 ||||| || ||| | || || | || || ||||| || ||| | | | || Sbjct 1250 CTCTTGACCAAATATTTAACCTTCATTAGGATATTCATTTTTTGTGGTTACCCTATCAAA 1191 Query 36338 TGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGC 36397 | | || || | | || |||||| || ||| | || ||||||| || Sbjct 1190 CTAA-AGGTTACCAAAGAACCATGCATAACATTAAATGGGGAACCTCCGAATATACCAAG 1132 Query 36398 AACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACAT 36457 ||| ||| ||| ||||| | ||||||||||| ||| || ||| | || |||| ||| Sbjct 1131 TACAACGAACATGTGGAATGAGTGCATAAGGATGTTGCATTTTGCTTAGAATACAATCAT 1072 Query 36458 AAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAA 36517 || || ||||| | ||| | ||||||| ||||| | | ||| | | || |||| Sbjct 1071 GAAGTTAAAAGTGGCACTAATTACTAGAGGCAAACCATTAAAAAAATTTCTTTAACCAAT 1012 Query 36518 AGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATAT 36577 ||| ||| |||||| | | || | | || |||| | ||||| | ||| | Sbjct 1011 TGGGCAGATTAAGAAAATAACAGTAGTAGATGTAACA-AGAAAGAATATGTAACAACGTT 953 Query 36578 CCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGAT 36637 | | || | ||||||||| ||||||| | ||| | || |||| |||| | || Sbjct 952 CTAAGGGCGCATACCTAGATGGAAACTAAGCTTCCACTCACGACCCATGTAACAAGCTAT 893 Query 36638 ACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCA 36691 ||||| | ||| || | ||||| || | ||| | || || || |||||||| Sbjct 892 ACCAAGTAAAAATTGTAGAACAATTAGCTCATAAAGACCACCATTGTATAACCA 839 >seq753951 Length=5828 Score = 100 bits (110), Expect = 8e-17 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 36411 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTC 36470 ||||| || |||||| | || ||| || ||||| || |||| ||| || |||||||| Sbjct 1575 TGGAATGGGTGCATAGGAATGATGTACTCAGCCTGGAATACAATCATGAAGTTGAAAGTA 1634 Query 36471 CCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAG 36530 || |||| || |||| |||||||| ||| || | | ||| || | ||| || ||| Sbjct 1635 CCAGAAAGTCCTAGAGACATACCATTAGAAAAGTTTCATTGACCGATTAGGTTGATCAAG 1694 Query 36531 AATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATA 36590 || ||| ||| | || ||||| | | |||||| | ||| ||||| || | |||| Sbjct 1695 AAAACAACAATAGTAACTACAACAAGAGTTGAATATGTAACAACAATCCAAGGACGCATA 1754 Query 36591 CCTAGTCTATAACTAAGTTCCCA 36613 |||| | | | ||||||||||| Sbjct 1755 TCTAGACAAAATCTAAGTTCCCA 1777 >seq493281 Length=200 Score = 95.1 bits (104), Expect = 4e-15 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 36707 ||||| | ||||| || | ||| || || || || |||||||| || || | || || Sbjct 36 AAGTGTAGAACAATTAGCTTATAAGGACCACCATTGTATAACCATTCATCAACGGATGTT 95 Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCA 36767 |||||| | |||||||| ||||| | ||| || || || | || | ||| || ||| Sbjct 96 GCTTCCTATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATGATGGCACCA 155 Query 36768 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 36812 ||||| || ||||||||||| |||| | ||| || ||||| ||| Sbjct 156 GAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 200 >seq666543 Length=3475 Score = 86.0 bits (94), Expect = 2e-12 Identities = 169/249 (68%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 36483 AGAGGCATACCATCAGAGAAA-CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAA 36541 |||||||| |||| | ||| || ||||| |||| ||||||| ||||| ||| || Sbjct 2361 AGAGGCATGCCATTGAAAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAACAGT 2302 Query 36542 TGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATA 36601 | |||| ||||| |||||||| | ||| ||| | | | |||||| | | Sbjct 2301 AGTAGCTGTAACAGAAGCTGAATATGTAACAACAATCTAAAGGCGCATACCCAAATGGAA 2242 Query 36602 ACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAAT 36661 |||||||||||| | || |||| |||| | | || || | ||||| | ||||| Sbjct 2241 ACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACTAAATAAGAAGTGTAGGACAAT 2182 Query 36662 GAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGG 36721 || | ||| || || | || |||||| | || || | | ||| |||||||| ||||| Sbjct 2181 TAGCTTATAAGGACCATCATTGTATAACTATTCATCAACAGATGCGGCTTCCCATATTGG 2122 Query 36722 GTAGAAGTG 36730 || || || Sbjct 2121 ATAAAAATG 2113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149103472293250