Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq551508 250 8e-62 seq516297 237 5e-58 seq545415 176 1e-39 seq616439 138 3e-28 seq717558 120 9e-23 seq161073 109 2e-19 seq212858 87.8 5e-13 seq711014 84.2 7e-12 seq493281 80.6 8e-11 >seq551508 Length=510 Score = 250 bits (276), Expect = 8e-62 Identities = 346/482 (72%), Gaps = 2/482 (0%) Strand=Plus/Minus Query 5384 ACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATAC 5443 || || ||||||| ||| |||||||||| |||| || ||| || || |||||||| Sbjct 484 ACTACAGGCCAAGCAGCTAGGAAGAAATTTAAAGAACATGAATTATTGAAACTAGCATAT 425 Query 5444 TGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCT 5503 ||||| || | || ||||| || || |||| || ||||| ||||| |||||||||||| Sbjct 424 TGGAATATCAATCGGCCAAAATAACCTGGAGCAGCCACAATATTATAAGTTTCTTCCTCT 365 Query 5504 TGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAA 5563 || |||||||| || || || ||| | || ||||| | || | | Sbjct 364 TGACCGAATTTGTAACCTGCATTAGCAGATTCATTTTTTGTGGTTTCCCTTATCAAACTA 305 Query 5564 GAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACA 5623 || || || | ||||||||||| ||| | | || |||||||| ||||| ||| Sbjct 304 GAGGTTACCAAGGAACCATGCATAGCTCTGAATAGGGAACCGCCGAATACACCAGCTACA 245 Query 5624 CCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAG 5683 | | ||||||||| || ||||||||||| ||||| || |||||||||| | ||| ||| Sbjct 244 TCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCATGAAG 185 Query 5684 TTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGG 5743 || |||||||||||||| | ||||||||||||||| || ||||| || || | ||| Sbjct 184 TTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAAAAGCTTCCTTGACCAATTGGG 125 Query 5744 TATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCA 5802 || | || || | | ||||| | || ||||| || ||||||||||| || |||||| Sbjct 124 TAGATCAAGAAAATAGCAGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAACAATCCA 66 Query 5803 TGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACC 5862 || ||||| | | | | ||||||||||||| | || |||| |||| || | ||| Sbjct 65 AGGGCGCATAGCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC 6 Query 5863 AA 5864 || Sbjct 5 AA 4 >seq516297 Length=515 Score = 237 bits (262), Expect = 5e-58 Identities = 361/513 (70%), Gaps = 1/513 (0%) Strand=Plus/Plus Query 5207 GGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGG 5266 ||||| || |||||||| ||||| ||||| ||||||||||||||||| ||||| || | Sbjct 2 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTTATA 61 Query 5267 ACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGACTGATTGAAGTTA 5326 | ||| ||| |||| || | | ||| | ||||| | || || ||||| || Sbjct 62 ATATCAGCCTAAGTATTAATTACACAACCTTGACTATCAACTATAGATTGGTTGAAATTG 121 Query 5327 AAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACG 5386 || || || || | |||| || |||| ||| || | || | | ||| || | || Sbjct 122 AAACCATTTAGGTAGAAAGTCAGAGTGTTGATACCTAAAGCAATGAACCAGATACCTACT 181 Query 5387 ACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGG 5446 | ||||||| | | ||||||||||||||| ||| ||| || || ||||||| ||| Sbjct 182 ATAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGAGAATTATTGAATATAGCATATTGG 241 Query 5447 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGG 5506 || || | || ||| | || |||||||| || ||| ||||| |||||||| ||||| Sbjct 242 AAAATCAATCGACCAGAATAACCATGAGCAGCCGTAATATTATAAGTTTCTTCATCTTGA 301 Query 5507 CCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAA 5566 ||||| | || || ||| ||| | | | ||||| | ||| | ||| Sbjct 302 TCGAATGTGTAACCTACATTCGCAGATTCATTTTCTATGGTTTCCCTAATCAAACTAGAG 361 Query 5567 GTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCG 5626 || || | ||||||||| || ||| | | ||||| ||||| ||| | | || Sbjct 362 GTTACCAATGAACCATGCATAACACTGAATAGGGAACCACCAAATACACCAACTATGCC- 420 Query 5627 AGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTA 5686 | ||||||||| | ||||||||||| ||||| || |||| |||||| | ||| ||||| Sbjct 421 AACATGTGGAATGAGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATGAAGTTG 480 Query 5687 AAAGTACCAGAGATACCAAGAGGCATACCATCA 5719 |||||||||||||| || ||||||||||||||| Sbjct 481 AAAGTACCAGAGATTCCTAGAGGCATACCATCA 513 >seq545415 Length=298 Score = 176 bits (194), Expect = 1e-39 Identities = 219/299 (73%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 5216 TGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATCTGCC 5275 |||||||| | ||| ||||| ||||||||||||||||| |||||||| | | ||| ||| Sbjct 296 TGAGCATTACATTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAAAATCAGCC 237 Query 5276 CAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACTGACTGATTGAAGTTAAAGCCG 5332 ||||| || | | ||| |||| ||||| | || || || || || || || Sbjct 236 CAAGTATTAATTACACGACCTTGGCTA---TCAACTATAGATTGGTTAAAATTGAAACCA 180 Query 5333 TTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGC 5392 || || || |||| ||||||| ||| || | || | | ||| || | || || || Sbjct 179 TTTAGGTTGAAAGTCATAGTGCCGATACCTAAAGCAATGAACCAGATACCTACTACAAGC 120 Query 5393 CAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATG 5452 |||| ||| | ||||||||||||| ||| ||| | || |||||||| | |||||| Sbjct 119 CAAGCAGCTATGAAGAAATGTAAAGAACGAGAATTATAGAAACTAGCATATTAGAAGATC 60 Query 5453 AGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAA 5511 | || ||||| || |||||||| || ||||| ||||| |||||||||||||| ||||| Sbjct 59 AATCAGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCGAA 1 >seq616439 Length=1776 Score = 138 bits (152), Expect = 3e-28 Identities = 238/342 (70%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 5391 GCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGA 5450 ||||| | | | ||||||||||||| ||| | | | || ||| |||| || || | Sbjct 518 GCCAAACAACTATGAAGAAATGTAAAGAACGAGAAATATCCAAACTACCATATTGAAAAA 459 Query 5451 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGA 5510 | | || | ||| || |||||||| | || || ||||| |||||||| ||||| ||| Sbjct 458 TCAATCGACTAAAATAACCATGAGCAACTACGATATTATAAGTTTCTTCATCTTGATCGA 399 Query 5511 ATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAG--AAG- 5567 |||| || || || || | | | || ||||| ||| | || ||| Sbjct 398 ATTTGTAACCTTAATTAACAAATTCATTTTTTGTGGTTTCCT---TGATCAAACTAAAGG 342 Query 5568 -TAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCG 5626 || ||||| ||||||||| || ||| |||| || | ||||| ||| | ||||| Sbjct 341 TTACCAAGAAA-CCATGCATAACATTGAATAAAGACTCATCAAATACACCAACTACACCT 283 Query 5627 AGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTA 5686 | || |||||| | ||||||||||| ||||| || ||| |||||| | ||| ||||| Sbjct 282 AACAAGTGGAATAGGTGCATAAGGATGTTGTGCTCAACCTAGAATACAATCATGAAGTTG 223 Query 5687 AAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTT 5728 ||||||| |||||| || | ||||||| ||||| ||| ||| Sbjct 222 AAAGTACTAGAGATTCCTAAAGGCATATCATCATAGAAGCTT 181 >seq717558 Length=1667 Score = 120 bits (132), Expect = 9e-23 Identities = 267/398 (67%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 5324 TTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAA 5383 || || || || || || |||||||||||| ||| || | || || | | | || | Sbjct 1429 TTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATGCCTAAAGTAGTGAACTAGATACCT 1370 Query 5384 ACGACGGGCCAAGTAGCCAG----GAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGC 5439 || || | ||||||||| || ||||||||||||| | | ||| || || ||||| Sbjct 1369 ACTACAGTCCAAGTAGCTAGCTGGGAAGAAATGTAAAAAATGTGAATTATTGAAACTAGC 1310 Query 5440 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTC 5499 ||| ||| | | | || ||||| || |||| | | | ||||| |||| |||||||| Sbjct 1309 ATATTGGTA-ACCAATCGGCCAAAATAACCATAATCAACCACAATAGTATAAGTTTCTTC 1251 Query 5500 CTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAG 5559 |||||| || ||| | || || | || || | | || ||| | | | | Sbjct 1250 CTCTTGACCAAATATTTAACCTTCATTAGGATATTCATTTTTTGTGGTTACCCTATCAAA 1191 Query 5560 CGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGC 5619 | || | || || | | ||||||||| || || | || ||||||| ||| Sbjct 1190 CTAA-AGGTTACCAAAGAACCATGCATAACATTAAATGGGGAACCTCCGAATATACCAAG 1132 Query 5620 AACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACAT 5679 ||| ||| ||||||||| | ||||||||||| ||| || ||| | |||||| | ||| Sbjct 1131 TACAACGAACATGTGGAATGAGTGCATAAGGATGTTGCATTTTGCTTAGAATACAATCAT 1072 Query 5680 AAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCAT 5717 ||||||||||| || || | ||||||| ||||| Sbjct 1071 GAAGTTAAAAGTGGCACTAATTACTAGAGGCAAACCAT 1034 >seq161073 Length=246 Score = 109 bits (120), Expect = 2e-19 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 5681 AAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAA 5740 ||||| |||||||||||||| || ||||||||||||||| || ||||| | || | Sbjct 244 AAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTAACCAATT 185 Query 5741 GGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAAT 5799 ||||| | || || || | ||||| || |||| || ||| ||||||| || ||| Sbjct 184 GGGTAGATCAAGAAAACAGCAGTAGTA-GCTGCAATAGGAGCTAAATATGCAACAACAAT 126 Query 5800 CCA-TGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGA 5858 ||| |||| |||| |||| | ||||||||||| | | || |||| |||| || | Sbjct 125 CCAATGGT-GCATACCTAGATGGAAACTAAGTTCCTACTCACGACCCATGTAAAAAGCTA 67 Query 5859 TACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCAT 5918 ||||| | | |||| | || | || | || || || |||||||| | |||||||| Sbjct 66 CACCAAGTAAGTAGTGTAGAACAATTAGCTCATAAGGGCCACCATTGTATAACCATTCAT 7 Query 5919 C 5919 | Sbjct 6 C 6 >seq212858 Length=258 Score = 87.8 bits (96), Expect = 5e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||||||| || ||||| || |||||||| ||||| ||||| |||| |||||||||||| Sbjct 125 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTTCATACCAAGGTTA 184 Query 5255 GCACGGTTCAGGACATCTGCCCAAGT 5280 |||||||| | | ||| | |||||| Sbjct 185 GCACGGTTGATAATATCAGTCCAAGT 210 >seq711014 Length=229 Score = 84.2 bits (92), Expect = 7e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 5629 CATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAA 5688 ||||||||| || ||||||||||| ||||| || ||||||||||| | || ||||| || Sbjct 223 CATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATAATGAAGTTGAA 164 Query 5689 AGTACCAGAGATACCAAGA 5707 ||||||||||| || ||| Sbjct 163 GGTACCAGAGATTCCTAGA 145 >seq493281 Length=200 Score = 80.6 bits (88), Expect = 8e-11 Identities = 137/197 (70%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 5840 CGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCT 5899 || |||| |||| || | ||||| | |||||| | || | || | || || || Sbjct 6 CGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCA 65 Query 5900 CCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACC 5957 |||||||| | ||||||||| | ||| | ||||||| | || || || ||||| || | Sbjct 66 CCATTGTATAACCATTCATCAACGGAT--GTTGCTTCCTATATTGGGTAAAAGTGCAAAC 123 Query 5958 CAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAG 6017 | || || || | || | | ||| || || || || ||||||||||| ||||||| Sbjct 124 CTATAGCTGCAGAAGTAGGAATGATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAG 183 Query 6018 ATCCTGCGACGGGTTCA 6034 |||| | || |||||| Sbjct 184 ATCCAGAAACAGGTTCA 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151278961626750