Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq551508 255 2e-63 seq516297 212 2e-50 seq545415 156 1e-33 seq616439 129 2e-25 seq161073 107 6e-19 seq753951 96.9 1e-15 seq493281 95.1 4e-15 >seq551508 Length=510 Score = 255 bits (282), Expect = 2e-63 Identities = 340/468 (73%), Gaps = 6/468 (1%) Strand=Plus/Minus Query 25645 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGG 25704 || ||||||||||| |||||||||| |||| || |||||| || |||||||| ||| Sbjct 481 ACAGGCCAAGCAGCTAGGAAGAAATTTAAAGAACATGAATTATTGAAACTAGCATATTGG 422 Query 25705 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 25764 || || | || ||||| || || |||| || ||||| ||||| || ||||| ||||| Sbjct 421 AATATCAATCGGCCAAAATAACCTGGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGA 362 Query 25765 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAAT--AAGT-GAG 25821 |||||||| || || || ||||||| || ||||| | || || | ||| Sbjct 361 CCGAATTTGTAACCTGCATTAGCAGATTCATTTTTTGTGGTTTCCCTTATCAAACTAGAG 302 Query 25822 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACA 25881 | || |||| || |||||||| ||||| | || |||||||| || || ||| Sbjct 301 GT--TACCAAGGAA-CCATGCATAGCTCTGAATAGGGAACCGCCGAATACACCAGCTACA 245 Query 25882 CCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAA 25941 | | ||| ||||| || ||||||||||| ||||| || |||| || |||| ||| || Sbjct 244 TCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCATGAAG 185 Query 25942 TTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGG 26001 |||||||| || || || | ||||||||||||||| | || || ||||| |||| ||| Sbjct 184 TTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAAAAGCTTCCTTGACCAATTGGG 125 Query 26002 TAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCAC 26061 |||| ||||| | |||| || ||||||||||| |||||||| || ||| ||||| Sbjct 124 TAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAACAATCCAA 65 Query 26062 GGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 || | ||| | || | ||||||||||||| | || |||| |||| Sbjct 64 GGGCGCATAGCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 17 >seq516297 Length=515 Score = 212 bits (234), Expect = 2e-50 Identities = 363/520 (70%), Gaps = 9/520 (2%) Strand=Plus/Plus Query 25464 AGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAG 25523 |||||| || || || ||||| ||||||||||||||||| || | || ||||| || | Sbjct 1 AGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTTAT 60 Query 25524 AATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTT 25583 ||| |||||| |||| | || | || | |||||| | || || ||||| || Sbjct 61 AATATCAGCCTAAGTATTAATTACACAACCTTGACTATCAACTATAGATTGGTTGAAATT 120 Query 25584 AAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGT 25643 || || || || | |||| || |||| || || | ||| | | ||| || | Sbjct 121 GAAACCATTTAGGTAGAAAGTCAGAGTGTTGATACCTAAAGCAATGAACCAGATACCTAC 180 Query 25644 GACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTG 25703 | ||||||||| | ||||||||||||||| ||| |||||| || ||||||| || Sbjct 181 TATAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGAGAATTATTGAATATAGCATATTG 240 Query 25704 GAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTG 25763 ||| || | || ||| | || |||||||| || ||| ||||| || ||||| ||||| Sbjct 241 GAAAATCAATCGACCAGAATAACCATGAGCAGCCGTAATATTATAAGTTTCTTCATCTTG 300 Query 25764 GCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAAT--AAGT-GA 25820 ||||| | || || ||| ||||||| | | ||||| | ||| || | || Sbjct 301 ATCGAATGTGTAACCTACATTCGCAGATTCATTTTCTATGGTTTCCCTAATCAAACTAGA 360 Query 25821 GGAAGTAACAA-GACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAA 25879 || || ||| || || |||||| || ||||| | ||||| ||||| || | | Sbjct 361 GG--TTACCAATGA--ACCATGCATAACACTGAATAGGGAACCACCAAATACACCAACTA 416 Query 25880 CACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAA 25939 || | ||| ||||| | ||||||||||| ||||| || |||| || |||| ||| | Sbjct 417 TGCC-AACATGTGGAATGAGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATGA 475 Query 25940 AATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 25979 | |||||||| || || || || ||||||||||||||||| Sbjct 476 AGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 515 >seq545415 Length=298 Score = 156 bits (172), Expect = 1e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 25474 TGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCC 25533 || || |||| ||||||||||||||||| || | || |||||||| | || |||||| Sbjct 296 TGAGCATTACATTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAAAATCAGCC 237 Query 25534 CAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTG 25593 ||||| | || | || | | |||||| | || || || || || || || || Sbjct 236 CAAGTATTAATTACACGACCTTGGCTATCAACTATAGATTGGTTAAAATTGAAACCATTT 177 Query 25594 AGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAA 25653 || || |||| ||||||| || || | ||| | | ||| || | || ||||| Sbjct 176 AGGTTGAAAGTCATAGTGCCGATACCTAAAGCAATGAACCAGATACCTACTACAAGCCAA 117 Query 25654 GCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGT 25713 ||||| | ||||||||||||| ||| ||||| || |||||||| | |||||| | | Sbjct 116 GCAGCTATGAAGAAATGTAAAGAACGAGAATTATAGAAACTAGCATATTAGAAGATCAAT 57 Query 25714 CTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAA 25769 | ||||| || |||||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct 56 CAGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCGAA 1 >seq616439 Length=1776 Score = 129 bits (142), Expect = 2e-25 Identities = 234/339 (69%), Gaps = 4/339 (1%) Strand=Plus/Minus Query 25649 GCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGA 25708 ||||| || | | ||||||||||||| ||| | ||| || ||| |||| || || | Sbjct 518 GCCAAACAACTATGAAGAAATGTAAAGAACGAGAAATATCCAAACTACCATATTGAAAAA 459 Query 25709 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGA 25768 | | || | ||| || |||||||| | || || ||||| || ||||| ||||| ||| Sbjct 458 TCAATCGACTAAAATAACCATGAGCAACTACGATATTATAAGTTTCTTCATCTTGATCGA 399 Query 25769 ATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAAT--AAGTGAGGAAGT 25826 |||| || || || || | ||||| || ||||| || || | | | | Sbjct 398 ATTTGTAACCTTAATTAACAAATTCATTTTTTGTGGTTTCCTTGATCAAACTAAAGGT-T 340 Query 25827 AACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAG 25886 | ||||| || |||||| || |||||||| || | ||||| || | ||||| | Sbjct 339 ACCAAGAAA-CCATGCATAACATTGAATAAAGACTCATCAAATACACCAACTACACCTAA 281 Query 25887 CATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAA 25946 || ||||| | ||||||||||| ||||| || ||| || |||| ||| || ||||| Sbjct 280 CAAGTGGAATAGGTGCATAAGGATGTTGTGCTCAACCTAGAATACAATCATGAAGTTGAA 221 Query 25947 AGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 25985 ||| | || || || | ||||||| ||||| |||| || Sbjct 220 AGTACTAGAGATTCCTAAAGGCATATCATCATAGAAGCT 182 >seq161073 Length=246 Score = 107 bits (118), Expect = 6e-19 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 25939 AAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAA 25998 || |||||||| || || || || ||||||||||||||||| || || |||| |||| Sbjct 244 AAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTAACCAATT 185 Query 25999 GGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATC 26058 ||||||| ||||| |||||| | ||||||| ||| ||| |||| || ||| ||| Sbjct 184 GGGTAGATCAAGAAAACAGCAGTAGTAGCTGCAATAGGAGCTAAATATGCAACAACAATC 125 Query 26059 CACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATG 26118 || | ||| ||||| ||||||||||| | | || |||| |||| | | Sbjct 124 CAATGGTGCATACCTAGATGGAAACTAAGTTCCTACTCACGACCCATGTAAAAAGCTACA 65 Query 26119 CCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTC 26177 || | | |||| | ||||| || | ||| || ||||| || || ||||| || || Sbjct 64 CCAAGTAAGTAGTGTAGAACAATTAGCTCATAAGGGCCACCATTGTATAACCATTCATC 6 >seq753951 Length=5828 Score = 96.9 bits (106), Expect = 1e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25891 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTC 25950 ||||| || |||||| | || ||| || ||||| || |||| ||| || |||||||| Sbjct 1575 TGGAATGGGTGCATAGGAATGATGTACTCAGCCTGGAATACAATCATGAAGTTGAAAGTA 1634 Query 25951 CCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAG 26010 || |||| || |||| |||||||| ||| || | | ||| || | ||| || ||| Sbjct 1635 CCAGAAAGTCCTAGAGACATACCATTAGAAAAGTTTCATTGACCGATTAGGTTGATCAAG 1694 Query 26011 AATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATG 26070 || ||| ||| | || ||||| | | |||||| | ||| ||||| || | ||| Sbjct 1695 AAAACAACAATAGTAACTACAACAAGAGTTGAATATGTAACAACAATCCAAGGACGCATA 1754 Query 26071 CCTAGTCTATAACTAAGTTCCCA 26093 |||| | | | ||||||||||| Sbjct 1755 TCTAGACAAAATCTAAGTTCCCA 1777 >seq493281 Length=200 Score = 95.1 bits (104), Expect = 4e-15 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187 ||||| | ||||| || | ||| || ||||| || || ||||| || || | || || Sbjct 36 AAGTGTAGAACAATTAGCTTATAAGGACCACCATTGTATAACCATTCATCAACGGATGTT 95 Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 |||||| | |||||||| ||||| | ||| || || ||| | || | ||| || || Sbjct 96 GCTTCCTATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATGATGGCACCA 155 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 ||||| || ||||||||||| |||| | ||| || ||||| ||| Sbjct 156 GAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150628851840500