Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq702768 113 3e-20 seq689433 111 1e-19 seq736048 96.9 3e-15 seq109077 96.9 3e-15 seq313781 89.7 4e-13 >seq702768 Length=508 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || ||||| |||||||||| ||| | ||| | || ||| Sbjct 309 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTCC 250 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || ||||| || || | ||| ||||| | || | || |||||||| | Sbjct 249 AACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGA 190 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| || ||| | | | || ||||| ||| ||||| | ||||| || ||| Sbjct 189 ATTTTTGCCTTCACATTATCTATAGTGTCTGAGCTCTCAACCTCTAGTGTAATTGTCTTT 130 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||||| || || ||||| ||||||||| Sbjct 129 CCCGTCAGGGTCTTCACAAATATCTGCATC 100 >seq689433 Length=414 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || ||||| |||||||||| || | ||| | || ||| Sbjct 230 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACCATCCTCC 171 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || || || ||||| | ||| ||||| | || | ||||||||||| | Sbjct 170 AACTGCTTCCCTGCGAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGA 111 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | | ||||| ||||||||| | || ||||| ||| Sbjct 110 ATTTTGGCCTTCACATTATCTATGGTATCTGAGCTCTCCACCTCTAGTGTGATCGTCTTT 51 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| || || ||||| |||||||| Sbjct 50 CCCGTCAGGGTCTTCACAAATATCTGCAT 22 >seq736048 Length=1016 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| |||| || | ||||| || || ||| |||||| || || || ||||||| Sbjct 636 GCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGC 695 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || | || || | ||||||||| |||||||| || | ||| || || | ||| Sbjct 696 CAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGG 755 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| || ||| ||| ||| | | | | ||||| ||| || Sbjct 756 AATACCCTCCTTGTCCTGGATTTTTGCTTTGACATTATCAATGGTGTCTGAGCTCTCAAC 815 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || |||||||| || | || || |||||||| ||||| Sbjct 816 TTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 863 >seq109077 Length=726 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || |||||| ||||| |||||||||| ||| |||| Sbjct 203 AGACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTTCGC 262 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || |||| | ||| || |||| |||| |||||| Sbjct 263 CCATCCTCAAGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGGAATCCCCTCC 322 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | || || ||| ||||| | ||| Sbjct 323 TTGTCCTGAATCTTCGCTTTCACATTGTCGATGGTATCCGAGCTCTCAACCTCTAAGGTA 382 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || ||||| || || || |||||||| Sbjct 383 ATTGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 420 >seq313781 Length=385 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTT 48670 || |||| |||||| ||||| || ||||| | ||| ||||||| ||||| | |||||||| Sbjct 348 TCTTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGATCCGGTGGGATC-CCCTCCTT 290 Query 48671 GTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 ||| ||||||| ||| ||| | | | | || || ||||||||||| ||| || Sbjct 289 GTCCTGAATCTTTGCTTTGACATTATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGAT 230 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| |||| || || || || || ||||| Sbjct 229 GGTCTTTCCAGTCAGTGTCTTCACGAAGATTTGCAT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377427155853375