Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq551508 288 1e-72 seq516297 288 1e-72 seq545415 185 1e-41 seq616439 136 4e-27 seq493281 107 2e-18 seq455454 93.3 5e-14 seq753951 91.5 2e-13 seq161073 89.7 6e-13 seq212858 87.8 2e-12 seq666543 82.4 8e-11 >seq551508 Length=510 Score = 288 bits (318), Expect = 1e-72 Identities = 351/479 (73%), Gaps = 0/479 (0%) Strand=Plus/Plus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||||||| || ||| | | |||||| |||||||| ||||||||| Sbjct 24 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGTTGCATAT 83 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || || || | || || ||| | |||||| |||| || | |||||||| Sbjct 84 TCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGAAGC 143 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || | ||| | |||||||| | || ||||||||||| |||| |||| | || ||||| Sbjct 144 TTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAG 203 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071 | |||||||||||||| |||||||| ||||| ||| | | || || ||||||||||| Sbjct 204 GTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGTATTCGGC 263 Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACT 163131 ||||| || || || |||||||| ||||| | || || ||| | | || || ||||| Sbjct 264 GGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAGGGAAACC 323 Query 163132 ACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAAC 163191 || | | || || || ||||| || ||||| ||||| ||||| ||||| || Sbjct 324 ACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAACTTATAAT 383 Query 163192 ATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAAC 163251 ||||| ||||||| || || ||||| || ||||| ||||| ||||| |||||| || Sbjct 384 ATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTTCAATAAT 443 Query 163252 TCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGC 163310 ||| |||| | | |||||||| ||||| | ||||| || | |||||||||||||| Sbjct 444 TCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGC 502 >seq516297 Length=515 Score = 288 bits (318), Expect = 1e-72 Identities = 376/518 (73%), Gaps = 7/518 (1%) Strand=Plus/Minus Query 162955 TCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCA 163014 ||||| | |||||||| || || ||||||||||| |||| |||| | || ||| | || Sbjct 515 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCT 456 Query 163015 GAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGT 163074 |||||||||||||| |||||| | ||||| ||| |||| | | |||||||| |||||| Sbjct 455 GAGCACAACATCCTTATGCACTCATTCCACATG-TTGGCATAGTTGGTGTATTTGGTGGT 397 Query 163075 TCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACT 163134 || || || |||| |||||| ||||| | || || ||| | | || || ||||| | Sbjct 396 TCCCTATTCAGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATA 337 Query 163135 GAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATT 163194 || | || || ||| ||||| | |||| ||||| ||||| ||||| || ||| Sbjct 336 GAAAATGAATCTGCGAATGTAGGTTACACATTCGATCAAGATGAAGAAACTTATAATATT 277 Query 163195 GTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCA 163254 ||||||||||| || | |||||| ||||| ||||| ||||| ||||| || || Sbjct 276 ACGGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTCT 217 Query 163255 CGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATG 163314 ||||| | || |||||||| | ||| | ||| | || | |||||||||| ||| | Sbjct 216 CGTTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTTA 157 Query 163315 GGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA- 163373 ||| | ||| || | ||| |||| || |||||||| ||||||||||| | ||||| Sbjct 156 GGTATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGAT 97 Query 163374 --CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGT 163431 |||| || || ||| ||||| ||| ||||| | || | || |||||| Sbjct 96 AGTCAAGGTTGT---GTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGT 40 Query 163432 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCC 163469 |||||||||||||| || ||||||||||| || ||||| Sbjct 39 ATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq545415 Length=298 Score = 185 bits (204), Expect = 1e-41 Identities = 221/299 (74%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 163165 TTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTG 163224 ||||| ||||| ||||| ||||| || ||||| ||||||||||| || ||||| | ||| Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 163225 ATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTC 163284 |||||| | ||||| |||| | || || ||||| | || |||||| | ||||| | Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 163285 CCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAAC 163344 | ||| || | |||||||||| ||| | ||| | |||||| | |||||||| || Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 163345 GGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGG 163401 |||||||| || |||||||| | ||||| | |||| || || ||| ||||||| Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAAGGTCGT---GTAATTAATACTTGG 237 Query 163402 GCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCA 163460 || ||| | | ||| | || |||||||||||||||||||| || |||||||||| Sbjct 238 GCTGATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 296 >seq616439 Length=1776 Score = 136 bits (150), Expect = 4e-27 Identities = 204/287 (71%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 |||| ||| | |||||| | || || ||| ||||||| |||| |||| | || ||| | Sbjct 185 TTCTATGATGATATGCCTTTAGGAATCTCTAGTACTTTCAACTTCATGATTGTATTCTAG 244 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071 | |||||||||||||| ||||||| ||||| || | || || | |||||||| | | Sbjct 245 GTTGAGCACAACATCCTTATGCACCTATTCCACTTGTTAGGTGTAGTTGGTGTATTTGAT 304 Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTT-GTTACTTCTTCTCTTATCAGAGAAAC 163130 | || | || | || |||||| |||| |||| || || | | | | |||| ||||| Sbjct 305 GAGTCTTTATTCAATGTTATGCATGGTT-TCTTGGTAACCTTTAGTTTGATCAAGGAAAC 363 Query 163131 TACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAA 163190 || | | || | || || ||||| || |||| ||||| ||||| ||||| || Sbjct 364 CACAAAAAATGAATTTGTTAATTAAGGTTACAAATTCGATCAAGATGAAGAAACTTATAA 423 Query 163191 CATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATG 163237 || || | ||||||||| || ||| |||| ||||| || || |||| Sbjct 424 TATCGTAGTTGCTCATGGTTATTTTAGTCGATTGATTTTTCAATATG 470 >seq493281 Length=200 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 162643 GAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCT 162702 ||||||||| | || || || || ||||| ||||| || ||||||||||| || ||||| Sbjct 199 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCCT 140 Query 162703 AGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAG 162762 | ||| ||||| ||| | ||||| || || || | ||||||| || | ||||||| Sbjct 139 ACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATGAA 80 Query 162763 TGGTTGTATAATGGTGGACCTT 162784 ||||| || |||||||| |||| Sbjct 79 TGGTTATACAATGGTGGTCCTT 58 >seq455454 Length=251 Score = 93.3 bits (102), Expect = 5e-14 Identities = 85/106 (80%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 163003 GTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGT 163062 || ||||| || |||||||||||||| |||||||| ||||| ||| | || | | ||| Sbjct 4 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCTTAGTTGGT 63 Query 163063 GTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTA 163108 ||||||| ||||| || || |||| |||||||||||| |||| || Sbjct 64 GTATTCGACGGTTCCCTATTCAGTGTTATGCACGGTTC-CTTGGTA 108 >seq753951 Length=5828 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 162830 GTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCAT 162889 |||||| | ||||||||||| | | ||| ||||||||||||||| |||| ||| Sbjct 1788 GTGGTCATAAGTGGGAACTTAGATTTTGTCTAGATATGCGTCCTTGGATTGTTGTTACAT 1729 Query 162890 ACTCTGCACCAGTATCTGCAG---CATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAG 162946 | || | | || || || | | | ||| |||||| || | | |||||||| Sbjct 1728 ATTCAACTCTTGT---TGTAGTTACTATTGTTGTTTTCTTGATCAACCTAATCGGTCAAT 1672 Query 162947 GTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGT 163006 | || ||| | | ||| |||| || ||||||||||||| |||| |||| | || | Sbjct 1671 GAAACTTTTCTAATGGTATGTCTCTAGGACTTTCTGGTACTTTCAACTTCATGATTGTAT 1612 Query 163007 TCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCA 163043 |||| || ||| ||| ||| | |||||||| ||||| Sbjct 1611 TCCAGGCTGAGTACATCATTCCTATGCACCCATTCCA 1575 >seq161073 Length=246 Score = 89.7 bits (98), Expect = 6e-13 Identities = 170/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 162755 TTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCG 162814 ||||||| ||||| || |||||||| |||| | || | || | |||| | | | | Sbjct 4 TTGATGAATGGTTATACAATGGTGGCCCTTATGAGCTAATTGTTCTACACTACTTACTTG 63 Query 162815 GAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTT 162874 | | | ||| |||||| ||| ||||||| || || ||||||||| | || Sbjct 64 GTGTAGCTTTTTACATGGGTCGTGAGTAGGAACTTAGTTTCCATCTAGGTATGCACCATT 123 Query 162875 GGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCA--TTC-GCTGTGTTCTTGGTCT 162931 |||| ||||||||| | || || ||| |||||| | | ||||| |||||| ||| Sbjct 124 GGATTGTTGTTGCATATTTAGCTCC--TAT-TGCAGCTACTACTGCTGTTTTCTTGATCT 180 Query 162932 ATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTA 162991 | || | ||| |||| || ||||| | |||||||| || || ||||||||||| | Sbjct 181 ACCCAATTGGTTAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCA 240 Query 162992 ACTACA 162997 ||| || Sbjct 241 ACTTCA 246 >seq212858 Length=258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 163348 TTCAACTTCAACCAATCCGTCGTTGAC-GC--AGGTGGTAAAGTGATTCCTACTTGGGCA 163404 ||||| ||||||||||| || ||||| || |||| || || ||| ||||||| | Sbjct 258 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGT---GTAATTAATACTTGGACT 202 Query 163405 GATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 163464 ||||| | ||| | || ||||||||| |||||||||| || ||||||||||| || Sbjct 201 GATATTATCAACCGTGCTAACCTTGGTATGAAAGTTATGCATGAACGTAATGCTCATAAT 142 Query 163465 TTCCCACTTGACCTTGCT 163482 ||||| || || || ||| Sbjct 141 TTCCCTCTAGATCTAGCT 124 >seq666543 Length=3475 Score = 82.4 bits (90), Expect = 8e-11 Identities = 168/250 (67%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 162698 TTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTG 162757 |||||| || | ||||| || | || || ||||| || |||||||| ||| || ||| Sbjct 2087 TTCCTACTTTTGAAGCTATATGTTTGCATTTTTATCCAATATGGGAAGCCGCATCTGTTG 2146 Query 162758 ATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAA 162817 |||| | ||| || |||| ||| |||| | || | ||| | |||||| | | | Sbjct 2147 ATGAATAGTTATACAATGATGGTCCTTATAAGCTAATTGTCCTACACTTCTTATTTAGTG 2206 Query 162818 TCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGA 162877 | | ||| |||||| ||||||||||| || || || |||||||| | || || Sbjct 2207 TAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCATTTGGGTATGCGCCTTTAGA 2266 Query 162878 TCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTT 162937 | |||| |||| || || | || | || | | ||| |||||| |||| || Sbjct 2267 TTGTTGTTACATATTCAGCTTCTGTTACAGCTACTACTGTTGTTTTCTTGATCTACCCAA 2326 Query 162938 TCGGTCAAGG 162947 | |||||||| Sbjct 2327 TTGGTCAAGG 2336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547857284445000