Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq516297 244 1e-59 seq551508 230 3e-55 seq545415 156 5e-33 seq345357 143 3e-29 seq616439 118 1e-21 seq86712 118 1e-21 seq589273 109 6e-19 seq655765 107 2e-18 seq612489 95.1 1e-14 seq212858 91.5 2e-13 seq711014 87.8 2e-12 seq298736 86.0 7e-12 >seq516297 Length=515 Score = 244 bits (270), Expect = 1e-59 Identities = 366/516 (71%), Gaps = 3/516 (1%) Strand=Plus/Minus Query 163348 TCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCA 163407 ||||| | ||||| || || |||||||| || ||||||| |||| |||| ||| | || Sbjct 515 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCT 456 Query 163408 GAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGA 163467 |||||||||||||| |||||| | ||||| ||||||| | | | |||||| || ||||| Sbjct 455 GAGCACAACATCCTTATGCACTCATTCCACATGTTGGCA-TAGTTGGTGTATTTGGTGGT 397 Query 163468 TCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACT 163527 || || ||| | |||||||| | || |||||| | | | || || | Sbjct 396 TCCCTATTCAGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATA 337 Query 163528 GAAACTGAGTCA-CAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACAT 163586 |||| ||| || | || || ||||||| || | |||||| ||||| || || || || Sbjct 336 GAAAATGAATCTGCGAATGTA-GGTTACACATTCGATCAAGATGAAGAAACTTATAATAT 278 Query 163587 CGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAG 163646 || || ||||| || | ||||| ||||| ||||||||||| |||||| || Sbjct 277 TACGGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTC 218 Query 163647 CAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACT 163706 | | | || |||||||| | || |||||| | || || |||||||| | ||| | Sbjct 217 TCGTTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTT 158 Query 163707 GGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGA 163766 || | | ||| || | ||| |||| || |||||||| |||||||| || || |||| Sbjct 157 AGGTATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGA 98 Query 163767 TGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTAT 163826 | |||| ||| |||| | || |||| ||| || | | || || ||| || ||||| Sbjct 97 TAGTCAAGGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGTAT 38 Query 163827 GGAAGTTATGCATGAGCGTAACGCACACAACTTCCC 163862 ||||||||||||||| ||||| || || || ||||| Sbjct 37 GGAAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq551508 Length=510 Score = 230 bits (254), Expect = 3e-55 Identities = 342/485 (71%), Gaps = 0/485 (0%) Strand=Plus/Plus Query 163219 TATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTA 163278 || ||||| ||||| ||||||||| | || | | ||||||||| ||||| ||| Sbjct 18 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGTT 77 Query 163279 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 163338 ||||| || || ||||||||||| || | || | ||| || |||| || | |||||| Sbjct 78 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAA 137 Query 163339 GGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTC 163398 || || | ||| | ||||| || | |||||||| || ||||||| |||| |||| Sbjct 138 GGAAGCTTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGTA 197 Query 163399 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTC 163458 ||||| | |||||||||||||| |||||||| ||||| ||||| | || |||||||| Sbjct 198 TTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGTA 257 Query 163459 TTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGT 163518 ||||| || || || ||| || |||||||| | || |||||| | | | Sbjct 258 TTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAGG 317 Query 163519 GAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACA 163578 || || || ||| ||| || || |||||||| || |||||||| ||||| || Sbjct 318 GAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAACT 377 Query 163579 TACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 163638 || || || || || || | || || || || || ||||| ||||||||||| ||| Sbjct 378 TATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTTC 437 Query 163639 AACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTT 163698 || || | | | | |||||||| || || |||||||| || || |||||||| Sbjct 438 AATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 497 Query 163699 ACTGC 163703 ||||| Sbjct 498 ACTGC 502 >seq545415 Length=298 Score = 156 bits (172), Expect = 5e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 163558 TTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTG 163617 || |||||||| ||||| || || || || || || || ||||| || || || | ||| Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 163618 ATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGG 163677 |||||| ||||||| ||| | || | | | || |||||| | || || ||| Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 163678 CCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAAC 163737 | ||| || || |||||||| | ||| | || | |||| ||| | |||||||| || Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 163738 GGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCA 163797 |||||||| || ||||| || || ||||| | || |||||||| | || |||||||| Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGGCT 240 Query 163798 GACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACA 163853 || | | ||||| ||| || |||||||||||||||||||| |||| || || Sbjct 241 GATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 296 >seq345357 Length=322 Score = 143 bits (158), Expect = 3e-29 Identities = 201/281 (72%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 164979 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTT 165038 || ||||| ||||| || || || ||| ||| |||| ||||||||| || ||| Sbjct 291 CGACCTTATAATGCAATCGCATTATCTATTCCAATTGTTGTTTTTGTTTCTGTA--CCTA 234 Query 165039 ATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATC 165098 || || ||||| |||||||| ||||||| || | || ||||| | ||| | || Sbjct 233 ATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGTGCCTAGTTTTGGTATAGCATCTATA 174 Query 165099 TTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATG 165158 ||| ||||| | | || | ||||| || || || ||||| | ||||| || |||||| Sbjct 173 TTTTGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATG 114 Query 165159 ATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTT 165218 ||||| |||| ||| | ||||| | || |||||| ||||||||||| | || ||| Sbjct 113 ATGGGAGTTGTCGGTGTATTGGGCGTTGCTCTGCTATGCGCTATTCATGGTGCTACCGTT 54 Query 165219 GAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTT 165259 |||||||| |||| || ||||| || |||||||| || Sbjct 53 GAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 13 >seq616439 Length=1776 Score = 118 bits (130), Expect = 1e-21 Identities = 200/287 (70%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 163345 TTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAA 163404 |||| ||| | ||||| | || |||||| | || ||||||| |||| |||| ||| | Sbjct 185 TTCTATGATGATATGCCTTTAGGAATCTCTAGTACTTTCAACTTCATGATTGTATTCTAG 244 Query 163405 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGT 163464 | |||||||||||||| ||||||| ||||| |||| || || | |||||| || | | Sbjct 245 GTTGAGCACAACATCCTTATGCACCTATTCCACTTGTTAGGTGTAGTTGGTGTATTTGAT 304 Query 163465 GGATCACTCTTCTCGGCAATGCATGGCAGTCTT-GTTACCTCTTCACTCGTCCGTGAGAC 163523 | || | ||| | |||||||| |||| || |||| | | || || || Sbjct 305 GAGTCTTTATTCAATGTTATGCATGG-TTTCTTGGTAACCTTTAGTTTGATCAAGGAAAC 363 Query 163524 GACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAA 163583 || ||| ||| | || || |||||||| || | |||||| ||||| || || || Sbjct 364 CACAAAAAATGAATTTGTTAATTAAGGTTACAAATTCGATCAAGATGAAGAAACTTATAA 423 Query 163584 CATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATG 163630 ||||| | || ||||| || || |||| ||||| || ||||||| Sbjct 424 TATCGTAGTTGCTCATGGTTATTTTAGTCGATTGATTTTTCAATATG 470 >seq86712 Length=407 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 165477 GCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGA 165536 ||||| |||||||| ||||||||||| |||||||||||||| || || || |||||||| Sbjct 2 GCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGT 61 Query 165537 CTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAA 165596 | ||||||||| |||| || ||||| | ||||||||| |||| ||||| | || Sbjct 62 ATTCGTGCTTGGATGGCGGCTCAAGATCAGCTTCATGAAAACCTTATATTCCCTAAGGAG 121 Query 165597 GTATTGCCTAGAGGCAACGCCCTTTAAT 165624 || | ||| | || || || ||||||| Sbjct 122 GTTCTACCTCGTGGAAATGCTCTTTAAT 149 >seq589273 Length=208 Score = 109 bits (120), Expect = 6e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 165303 GTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGG 165362 ||||| || ||| |||| ||||| || ||||| || |||| ||||| || || | ||| Sbjct 1 GTCACCGCTAACTGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGG 60 Query 165363 CTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATT 165422 | ||||| || ||||| ||||| || || | | | | |||| || |||| | Sbjct 61 TTACATTTCTTTATGTTATTTGTACCAGTAACCGATTTATGGATGAGTGCTTTTGGAGTA 120 Query 165423 ATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCA 165482 | ||||| ||| | ||| | ||||| || || || || ||||| ||| | ||||| Sbjct 121 GTCGGTCTGGCTTTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCG 180 Query 165483 GAAGATCCAGAATTTGAGACCTTCTACA 165510 |||||||| ||||||||||| ||||||| Sbjct 181 GAAGATCCTGAATTTGAGACTTTCTACA 208 >seq655765 Length=3443 Score = 107 bits (118), Expect = 2e-18 Identities = 236/352 (67%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 165249 GCAAATACCTTTAAGGCGTTTGATTCGAC--ACAGGAAGAAGAGACTTATTCTATGGTCA 165306 |||||||| ||| ||| ||| || | | | | ||||| | ||||||| ||||||| Sbjct 2250 GCAAATACATTTCGGGCTTTTAATCCATCTTAAACTAAGAAAA--CTTATTCAATGGTCA 2193 Query 165307 CTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTC 165366 ||| ||||| || | ||| || ||||| ||| ||||| || || | | | | Sbjct 2192 TTGCTAACCGTTTTTCGTCCCAAATCTTTAAGGTTGTTTTTTCCAATAAATGTTTTTTAC 2133 Query 165367 ATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTG 165426 |||| || |||| ||||| || || | | | |||| || |||| | | | Sbjct 2132 ATTTCTTTGTGTTATTTGTACCAGTAACCAATTTATGGATGAGTGCTCTTGGAGTAGTCG 2073 Query 165427 GTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAG 165486 |||| ||||| ||| | |||| || | ||||| || || ||| | || |||| Sbjct 2072 GTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAATCCATGTAGTGGAAG 2013 Query 165487 ATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTT 165546 |||| |||||||||| |||||||||||||| || || | || ||||| | | | ||| Sbjct 2012 ATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCCTAAACGAAGGTATTCATACTT 1953 Query 165547 GGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 165598 || || || | ||||| || |||||||| |||| ||| | || || || Sbjct 1952 GGATGACAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGAGGAGGT 1901 >seq612489 Length=2436 Score = 95.1 bits (104), Expect = 1e-14 Identities = 199/292 (68%), Gaps = 6/292 (2%) Strand=Plus/Minus Query 165294 TATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAAC 165353 ||||| |||||||| | |||| ||||| ||| || ||||| | |||| |||||||| Sbjct 503 TATTCAATGGTCACCACTAACCACTTCTAGTCTCAAATCTTTAGTGTTGCTTTTTCTAAT 444 Query 165354 AAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGA--CATCCT 165411 || | | |||| ||| | || ||| | | | | ||||| |||| ||| || Sbjct 443 AAACATTTTACACATTCTTT-AGATTATTTATACAAGAAACTGGTCTATGGATGCATACT 385 Query 165412 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 165471 || | | || | || | ||| | ||| | | |||||| | ||||| ||||| | Sbjct 384 CTTGTAG--TTTTCAGTATAGCTTTGAACTTACATGCTTATAACTTCGTTTCCCAGGAAA 327 Query 165472 TCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATG 165531 ||| | || | |||||| |||||||||| |||||||||||||| || | || |||| Sbjct 326 CCAGTGTAGAAAAAGATCTCAAATTTGAGACTTTCTACACCAAAAATATGATCTT-AATG 268 Query 165532 AAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTAT 165583 |||| | |||||| ||| || |||||||| ||||||| |||| Sbjct 267 AAGGTATTTAAGCTTGGATGGTGGCTCAAGATCAACCTTATGAAAAGCTTAT 216 >seq212858 Length=258 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 163741 TTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGAC 163800 ||||| |||||||| || | ||||| | || |||||||| | || |||||| | || Sbjct 258 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGACTGAT 199 Query 163801 GTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTC 163860 | | ||||| ||| || |||||| ||||||||||||| ||||| || || || ||| Sbjct 198 ATTATCAACCGTGCTAACCTTGGTATGAAAGTTATGCATGAACGTAATGCTCATAATTTC 139 Query 163861 CCACTCGATCTTGCT 163875 || || ||||| ||| Sbjct 138 CCTCTAGATCTAGCT 124 >seq711014 Length=229 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 163363 CTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTG 163422 || || |||||||| || ||||||| ||| |||| ||||| || |||||||||||||| Sbjct 146 CTAGGAATCTCTGGTACCTTCAACTTCATTATTGTATTCCAGGCTGAGCACAACATCCTT 205 Query 163423 ATGCACCCCTTCCATATGTTGGG 163445 |||||||| ||||| ||||| || Sbjct 206 ATGCACCCATTCCACATGTTAGG 228 >seq298736 Length=203 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 164983 CTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCT 165042 |||| ||||| || || |||||| ||| |||||||||||||| | | ||||| || | Sbjct 74 CTTATAATGCAATCGCATTCTCTACTCCAATTGCTGTTTTTGTTTCCATATTCCTAATTT 133 Query 165043 ACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTA 165102 | ||||| ||||||| ||||||| || || || ||||| || ||||| || ||| Sbjct 134 ATCCACTAGGTCAGTTTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTC 193 Query 165103 GATTC 165107 ||||| Sbjct 194 GATTC 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557886389265000