Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq681135 109 1e-18 >seq681135 Length=1827 Score = 109 bits (120), Expect = 1e-18 Identities = 487/763 (64%), Gaps = 14/763 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| || || ||||| |||||||| ||||| |||| ||| ||||| ||| Sbjct 280 CTGGTACTCCCCAACCCTCTTCTCGAAGAAGTTGGTCTTTCCCTGCAAAGAGATTAGCTC 339 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| || || | ||| |||| | | || | |||| | ||| Sbjct 340 CATCCAGTCGAACGGATTCGAAACGTTGTACATCTTCCCGTAA--CCCAAGGCGCCGAGC 397 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| |||| || ||| | |||||||||| ||| || | ||||||| || | || Sbjct 398 AGGCGATCGGCAACGAATTCGATGTATTGACTCATTAGAGCACTGTTCATCCCCACTAGA 457 Query 48017 GA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | ||||| || || | || ||||| | ||||| | ||| | || | || || Sbjct 458 GCGCACGGT-AACGCGTCGCAGACGAACTCTCTTTCTATATCCACCGAGTCGGCGACGAT 516 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 ||| || | ||| |||| || | || | || ||||||| ||| || Sbjct 517 TGCCTTCACTCTCTCCTCGCTTAGTTTATTCCTAAGTAGGCTG---TAGAGCAAGCACGC 573 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 || || | ||| ||||| ||||| || ||| | | | || ||||| | || || Sbjct 574 GAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGG 633 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | | || |||||||| || | ||| || |||||||||||||| Sbjct 634 CATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCC 693 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||||| ||||| ||| || | || | || | || ||| |||||| Sbjct 694 TTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGTC---GATCCA 750 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 || ||||| | || |||||| | || || || || || || || | ||||| Sbjct 751 TCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCGTGAAAGAG 810 Query 48376 CTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGA 48435 | | || ||| || ||| | ||| | | || | |||||||||||| Sbjct 811 CCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGTACATCTCAGA 870 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 ||| | || || || || ||||| || || |||||||| | ||||| | ||||| || Sbjct 871 GTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGAGACCTGGAC 930 Query 48496 TTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 || | ||| || ||| || ||||| || ||| || || || ||||| || |||| Sbjct 931 CTCCTTCATGAACCT-TCCGGCGAGATTTTCGAGGACGATTCCGTCAGAAGCGGCGAAGA 989 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG 48597 ||||||||| ||| | | ||| || ||||| | |||||| Sbjct 990 AGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAG 1032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922728359520000