Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq551508 235 2e-57 seq516297 201 3e-47 seq545415 154 4e-33 seq616439 114 4e-21 seq161073 104 7e-18 seq493281 91.5 4e-14 seq753951 86.0 2e-12 seq212858 84.2 7e-12 >seq551508 Length=510 Score = 235 bits (260), Expect = 2e-57 Identities = 338/469 (72%), Gaps = 8/469 (2%) Strand=Plus/Minus Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086 || ||||||||||| | |||||||| || | | ||| || || |||||||| ||| Sbjct 481 ACAGGCCAAGCAGCTAGGAAGAAATTTAAAGAACATGAATTATTGAAACTAGCATATTGG 422 Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146 || || | || ||||| || || |||| || ||||||||||| || ||||| ||||| Sbjct 421 AATATCAATCGGCCAAAATAACCTGGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGA 362 Query 18147 CCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAAT--AAGT-GAG 18203 || ||||| || || || ||| ||| | || ||||| || || || | ||| Sbjct 361 CCGAATTTGTAACCTGCATTAGCAGATTCATTTTTTGTGGTTTCCCTTATCAAACTAGAG 302 Query 18204 GAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACA 18263 | || |||| || |||||||| ||||| | || |||||||| || || ||| Sbjct 301 GT--TACCAAGGAA-CCATGCATAGCTCTGAATAGGGAACCGCCGAATACACCAGCTACA 245 Query 18264 CCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAA 18323 | | ||| ||||| || ||||||||||| ||||| || | |||||||| | |||||| Sbjct 244 TCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCATGAAG 185 Query 18324 TTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGA 18383 ||||||||||| || | ||||||||||||||| | || || ||||| |||| || Sbjct 184 TTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAAAAGCTTCCTTGACCAATTGGG 125 Query 18384 TA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCA 18442 || | | ||||| || | |||||||| || || || ||||| |||||| |||||| Sbjct 124 TAGATCAAGAAAATAGCAGTA-GCAGCTGCAACAGGAGCTGAATATGCAACAACAATCCA 66 Query 18443 CGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 ||||||||| | || | ||||||||||||| | || ||||||||| Sbjct 65 AGGGCGCATAGCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 17 >seq516297 Length=515 Score = 201 bits (222), Expect = 3e-47 Identities = 360/519 (69%), Gaps = 9/519 (2%) Strand=Plus/Plus Query 17847 GGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTGTTGAGT 17906 ||||| |||||||||||||| || ||||||||||| | ||||||||||| | || | Sbjct 2 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTTATA 61 Query 17907 ACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGATTGGTTGAAGTTG 17966 | |||||| | ||| | || ||| | | || || ||||||||||| ||| Sbjct 62 ATATCAGCCTAAGTATTAATTACACAACCTTGACTATCAACTATAGATTGGTTGAAATTG 121 Query 17967 AATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTG 18026 || ||||| || | |||| || |||| ||| || | || | | ||| || | Sbjct 122 AAACCATTTAGGTAGAAAGTCAGAGTGTTGATACCTAAAGCAATGAACCAGATACCTACT 181 Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086 | ||||||||| | | ||||||||||| | | ||| || || ||||||| ||| Sbjct 182 ATAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGAGAATTATTGAATATAGCATATTGG 241 Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146 || || | || ||| | || |||||||| || ||||||||| || ||||| ||||| Sbjct 242 AAAATCAATCGACCAGAATAACCATGAGCAGCCGTAATATTATAAGTTTCTTCATCTTGA 301 Query 18147 CCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAAT--AAGT-GAG 18203 | ||| | || || ||| ||| ||| || | ||||| ||||| || | ||| Sbjct 302 TCGAATGTGTAACCTACATTCGCAGATTCATTTTCTATGGTTTCCCTAATCAAACTAGAG 361 Query 18204 GAAGTAACAA-GACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAAC 18262 | || ||| || || |||||| || ||||| | ||||| ||||| || | | Sbjct 362 GT--TACCAATGAA--CCATGCATAACACTGAATAGGGAACCACCAAATACACCAACTAT 417 Query 18263 ACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAA 18322 || | ||| ||||| | ||||||||||| ||||| || || | |||||| | |||||| Sbjct 418 GCCAA-CATGTGGAATGAGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATGAA 476 Query 18323 ATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGA 18361 ||||||||||| || || ||||||||||||||||| Sbjct 477 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 515 >seq545415 Length=298 Score = 154 bits (170), Expect = 4e-33 Identities = 215/299 (72%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 17854 TATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTGTTGAGTACGTCAG 17913 |||||||||||| || ||||||||||| | ||||||||||| | ||||| | |||| Sbjct 298 TATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAAAATCAG 239 Query 17914 CCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATGGATTGGTTGAAGTTGAATCCA 17972 |||| ||| | || | ||| ||| | || || |||||||| || ||||| ||| Sbjct 238 CCCAAGTATTAATTACACGACCTTG-GCTATCAACTATAGATTGGTTAAAATTGAAACCA 180 Query 17973 TTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGGGC 18032 || || || |||| ||||||| ||| || | || | | ||| || | || || Sbjct 179 TTTAGGTTGAAAGTCATAGTGCCGATACCTAAAGCAATGAACCAGATACCTACTACAAGC 120 Query 18033 CAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAGATG 18092 |||||||| | ||||||||||| | | ||| | || |||||||| | |||||| Sbjct 119 CAAGCAGCTATGAAGAAATGTAAAGAACGAGAATTATAGAAACTAGCATATTAGAAGATC 60 Query 18093 AGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAA 18151 | || ||||| || |||||||| || ||||||||||| || ||||| ||||| || || Sbjct 59 AATCAGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCGAA 1 >seq616439 Length=1776 Score = 114 bits (126), Expect = 4e-21 Identities = 231/339 (68%), Gaps = 4/339 (1%) Strand=Plus/Minus Query 18031 GCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAGA 18090 ||||| || | | ||||||||||| | | | | | || ||| |||| || || | Sbjct 518 GCCAAACAACTATGAAGAAATGTAAAGAACGAGAAATATCCAAACTACCATATTGAAAAA 459 Query 18091 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAA 18150 | | || | ||| || |||||||| | || |||||||| || ||||| ||||| | | Sbjct 458 TCAATCGACTAAAATAACCATGAGCAACTACGATATTATAAGTTTCTTCATCTTGATCGA 399 Query 18151 ATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAAT--AAGTGAGGAAGT 18208 |||| || || || || | | ||| | || ||||| | || || | | | | Sbjct 398 ATTTGTAACCTTAATTAACAAATTCATTTTTTGTGGTTTCCTTGATCAAACTAAAGGT-T 340 Query 18209 AACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAG 18268 | ||||| || |||||| || |||||||| || | ||||| || | ||||| | Sbjct 339 ACCAAGAAA-CCATGCATAACATTGAATAAAGACTCATCAAATACACCAACTACACCTAA 281 Query 18269 CATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAA 18328 || ||||| | ||||||||||| ||||| || | | |||||| | |||||| ||||| Sbjct 280 CAAGTGGAATAGGTGCATAAGGATGTTGTGCTCAACCTAGAATACAATCATGAAGTTGAA 221 Query 18329 AGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 ||||| || || | ||||||| ||||| |||| || Sbjct 220 AGTACTAGAGATTCCTAAAGGCATATCATCATAGAAGCT 182 >seq161073 Length=246 Score = 104 bits (114), Expect = 7e-18 Identities = 172/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 18319 TGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAA 18378 |||| ||||||||||| || || ||||||||||||||||| || || |||| |||| Sbjct 246 TGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTAACCAA 187 Query 18379 AAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACA 18436 || || | | ||||| || | || || |||||| | || || |||| |||||| Sbjct 186 TTGGGTAGATCAAGAAA-ACAGCAGTAGT-AGCTGCAATAGGAGCTAAATATGCAACAAC 129 Query 18437 AATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGC 18496 |||||| || |||||||||| ||||||||||| | | || ||||||||| || Sbjct 128 AATCCAATGGTGCATACCTAGATGGAAACTAAGTTCCTACTCACGACCCATGTAAAAAGC 69 Query 18497 GATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTC 18556 | || | | |||| | ||||| || | ||| || || || || |||||||| || Sbjct 68 TACACCAAGTAAGTAGTGTAGAACAATTAGCTCATAAGGGCCACCATTGTATAACCATTC 9 Query 18557 GTC 18559 || Sbjct 8 ATC 6 >seq493281 Length=200 Score = 91.5 bits (100), Expect = 4e-14 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 ||||| | ||||| || | ||| || || || || |||||||| || || | || || Sbjct 36 AAGTGTAGAACAATTAGCTTATAAGGACCACCATTGTATAACCATTCATCAACGGATGTT 95 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 |||||| | |||||||| ||||| | ||| || || ||| | || | ||| || || Sbjct 96 GCTTCCTATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATGATGGCACCA 155 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCA 18674 || || || ||||||||||| |||| | ||| || ||||| ||| Sbjct 156 GAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 200 >seq753951 Length=5828 Score = 86.0 bits (94), Expect = 2e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18273 TGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTA 18332 ||||| || |||||| | || ||| || || |||||||| | |||||| ||||||||| Sbjct 1575 TGGAATGGGTGCATAGGAATGATGTACTCAGCCTGGAATACAATCATGAAGTTGAAAGTA 1634 Query 18333 CCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCC-AAAAGGATAAACGAG 18391 || || || |||| |||||||| ||| || | | ||| || | ||| | | | || Sbjct 1635 CCAGAAAGTCCTAGAGACATACCATTAGAAAAGTTTCATTGACCGATTAGGTTGATCAAG 1694 Query 18392 AAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCAT 18451 ||| || | | | || | || | | ||||| | |||| |||||| || ||||| Sbjct 1695 AAA-ACAACAATAGTAACTACAACAAGAGTTGAATATGTAACAACAATCCAAGGACGCAT 1753 Query 18452 ACCTAGTCTATAACTAAGTTCCCA 18475 | |||| | | | ||||||||||| Sbjct 1754 ATCTAGACAAAATCTAAGTTCCCA 1777 >seq212858 Length=258 Score = 84.2 bits (92), Expect = 7e-12 Identities = 102/138 (74%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| ||||| |||||||||||||| || |||||||||| | |||||||| Sbjct 124 AGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTTCATACCAAGGTT 183 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||| ||| ||| | || | ||| | | | ||||| Sbjct 184 AGCACGGTTGATAATATCAGTCCAAGTATTAATTACACGACCTTGGCTATCAACTACA-- 241 Query 17951 GGATTGGTTGAAGTTGAA 17968 ||||||||||| ||||| Sbjct 242 -GATTGGTTGAAATTGAA 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149959714450750