Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq551508 277 5e-70 seq516297 235 2e-57 seq545415 192 2e-44 seq717558 120 9e-23 seq161073 98.7 3e-16 seq753951 80.6 8e-11 >seq551508 Length=510 Score = 277 bits (306), Expect = 5e-70 Identities = 353/486 (73%), Gaps = 0/486 (0%) Strand=Plus/Minus Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| ||||| |||||||| |||||||| ||||| || ||||||| | | || ||| Sbjct 502 GCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATTTAAAGAACATGAA 443 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 ||||| || |||||||||||||| || | || |||||||| || ||||||| |||||| Sbjct 442 TTATTGAAACTAGCATATTGGAATATCAATCGGCCAAAATAACCTGGAGCAGCCACAATA 383 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 || ||||| |||||||||||||| || |||||||| || || | | || || Sbjct 382 TTATAAGTTTCTTCCTCTTGACCGAATTTGTAACCTGCATTAGCAGATTCATTTTTTGTG 323 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || || | || | || || |||| | ||| |||||||| ||| | || Sbjct 322 GTTTCCCTTATCAAACTAGAGGTTACCAAGGAACCATGCATAGCTCTGAATAGGGAACCG 263 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 || ||||| || || ||| | | |||||| || || |||||||| || ||||||||| || Sbjct 262 CCGAATACACCAGCTACATCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAACC 203 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 ||||| || | |||| ||||||| || || || || | | |||||| ||||| |||| Sbjct 202 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAAAAG 143 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061 || || |||| || || | | ||| | |||||| ||||| || |||||||| || Sbjct 142 CTTCCTTGACCAATTGGGTAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAA 83 Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121 || ||||||| ||||| || | ||| | || || | |||||||||||||| || ||| Sbjct 82 TATGCAACAACAATCCAAGGGCGCATAGCCAGACGGAAACTAAGTTCCCACTCACGACCC 23 Query 22122 ATGTAA 22127 |||||| Sbjct 22 ATGTAA 17 >seq516297 Length=515 Score = 235 bits (260), Expect = 2e-57 Identities = 362/515 (70%), Gaps = 1/515 (0%) Strand=Plus/Plus Query 21483 GGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGA 21542 ||||| || || || || || |||||||| || || | |||||||| ||||| || | | Sbjct 2 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTTATA 61 Query 21543 ATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTG 21602 || |||||| | || || || || || | | | | | | ||||||||| || ||| Sbjct 62 ATATCAGCCTAAGTATTAATTACACAACCTTGACTATCAACTATAGATTGGTTGAAATTG 121 Query 21603 AAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACA 21662 |||||||| | || ||||| || || | || | ||| ||||| |||||||| Sbjct 122 AAACCATTTAGGTAGAAAGTCAGAGTGTTGATACCTAAAGCAATGAACCAGATACCTACT 181 Query 21663 ACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGG 21722 | |||||| ||| | || |||||||| | | ||| |||||||| || ||||||||||| Sbjct 182 ATAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGAGAATTATTGAATATAGCATATTGG 241 Query 21723 AAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGA 21782 || || | |||||| |||| || |||||||| |||||| ||||| ||||| |||||| Sbjct 242 AAAATCAATCGACCAGAATAACCATGAGCAGCCGTAATATTATAAGTTTCTTCATCTTGA 301 Query 21783 CCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGAC 21842 | || ||||||| ||| || | | ||| | || || | ||| | || Sbjct 302 TCGAATGTGTAACCTACATTCGCAGATTCATTTTCTATGGTTTCCCTAATCAAACTAGAG 361 Query 21843 GTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCC 21902 || |||| ||| |||||| || ||| | ||||||||||| || | | || Sbjct 362 GTTACCAATGAACCATGCATAACACTGAATAGGGAACCACCAAATACACCAACTA-TGCC 420 Query 21903 AGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTG 21962 | |||||| || | |||||||| || ||||||||||||| ||| || | |||| ||||| Sbjct 421 AACATGTGGAATGAGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATGAAGTTG 480 Query 21963 AAGGTGCCGGATATCCCCAAGGGCATAGCATCAGA 21997 || || || || || || | |||||| ||||||| Sbjct 481 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 515 >seq545415 Length=298 Score = 192 bits (212), Expect = 2e-44 Identities = 213/284 (75%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 21504 TCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATC 21563 |||||||| || || | |||||||| |||||||| | || |||||||| || || || Sbjct 284 TCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAAAATCAGCCCAAGTATTAATT 225 Query 21564 ACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCC 21623 || | || | | | | | |||||||||||| ||||||||||| | |||||||| | Sbjct 224 ACACGACCTTGGCTATCAACTATAGATTGGTTAAAATTGAAACCATTTAGGTTGAAAGTC 165 Query 21624 ATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAG 21683 || || | || | ||| ||||| |||||||| ||| |||| ||||| | ||| Sbjct 164 ATAGTGCCGATACCTAAAGCAATGAACCAGATACCTACTACAAGCCAAGCAGCTATGAAG 105 Query 21684 AAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAG 21743 ||||| | | ||| ||||||| || |||||||||| |||||| | | |||||||| Sbjct 104 AAATGTAAAGAACGAGAATTATAGAAACTAGCATATTAGAAGATCAATCAGCCAAAATAA 45 Query 21744 CCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAA 21787 || |||||||| |||||||| ||||| |||||||||||||| || Sbjct 44 CCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCGAA 1 >seq717558 Length=1667 Score = 120 bits (132), Expect = 9e-23 Identities = 148/201 (74%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 21600 TTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCT 21659 ||||||||||| | |||||||||||| || | ||| | | || ||| | |||||| Sbjct 1429 TTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATGCCTAAAGTAGTGAACTAGATACCT 1370 Query 21660 ACAACAGGCCAGGCAGCAAGA----AAGAAATGAAGACTACGGGAATTATTAAAGCTAGC 21715 || |||| ||| | ||| || |||||||| | | | | |||||||| || ||||| Sbjct 1369 ACTACAGTCCAAGTAGCTAGCTGGGAAGAAATGTAAAAAATGTGAATTATTGAAACTAGC 1310 Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775 ||||||| | || | | |||||||| || | | || | |||||| | ||||| ||||| Sbjct 1309 ATATTGGTAACCAATCGG-CCAAAATAACCATAATCAACCACAATAGTATAAGTTTCTTC 1251 Query 21776 CTCTTGACCAAACTTGTAACC 21796 |||||||||||| | ||||| Sbjct 1250 CTCTTGACCAAATATTTAACC 1230 >seq161073 Length=246 Score = 98.7 bits (108), Expect = 3e-16 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 21955 TGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAA 22014 || ||||||| || || || || || | |||||| |||||||||| || | |||| Sbjct 246 TGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTAACCAA 187 Query 22015 ACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGA 22074 || || | | ||| |||||||| | ||| || | |||||| | || ||||||| | Sbjct 186 TTGGGTAGATCAAGAAAACAGCAGTAGTAGCTGCAATAGGAGCTAAATATGCAACAACAA 127 Query 22075 TCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG- 22133 |||| | ||| ||||| | | ||||||||| |||| || ||||||||| |||| Sbjct 126 TCCAATGGTGCATACCTAGATGGAAACTAAGTTCCTACTCACGACCCATGTAA--AAAGC 69 Query 22134 -ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTC 22192 || |||| | | |||| | || | || | | || || || ||||| | |||||| Sbjct 68 TACACCAAGTAAGTAGTGTAGAACAATTAGCTCATAAGGGCCACCATTGTATAACCATTC 9 Query 22193 ATCAA 22197 ||||| Sbjct 8 ATCAA 4 >seq753951 Length=5828 Score = 80.6 bits (88), Expect = 8e-11 Identities = 144/208 (69%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 21907 TGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGG 21966 |||| || || |||||| |||| ||| |||||||||||| || | |||| ||||||| | Sbjct 1573 TGTGGAATGGGTGCATAGGAATGATGTACTCAGCCTGGAATACAATCATGAAGTTGAAAG 1632 Query 21967 TGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCC-AAACGGATAAACA 22025 | || || | || | | |||| ||| |||||| | || || | || | | || Sbjct 1633 TACCAGAAAGTCCTAGAGACATACCATTAGAAAAGTTTCATTGACCGATTAGGTTGATCA 1692 Query 22026 AGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTC 22085 | ||| ||| || | | | | | ||| ||| || || | ||||| ||||| || | | Sbjct 1693 A-GAAAACAACAATAGTAACTACAACAAGAGTTGAATATGTAACAACAATCCAAGGACGC 1751 Query 22086 ATCCCTAGTCGATAGCTAAGTTCCCACT 22113 || |||| | | | ||||||||||||| Sbjct 1752 ATATCTAGACAAAATCTAAGTTCCCACT 1779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144895200652500