Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq728136 109 6e-19 seq686278 107 2e-18 seq5092 104 3e-17 seq681135 95.1 1e-14 >seq728136 Length=2057 Score = 109 bits (120), Expect = 6e-19 Identities = 192/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| || ||| |||| | || || ||| || ||| |||||| Sbjct 1540 CCCGGAACCGGCAAGACCCTACTGGCCAGAGCAGTGGCCGGAGAAGCAGGTGTGCCATTC 1599 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || |||| | ||| | | || || || ||||||| || ||||| || || || Sbjct 1600 TTCTCGTGCGCAGCCTCTGAATTCGTTGAATTGTTTGTAGGAGTGGGAGCATCCAGAGTC 1659 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATG 175489 || || | ||||| | || |||||||| || || ||||| |||||||||| Sbjct 1660 CGGGACTTGTTTGAGAAGGC-----AAAATCAAAGGCACCCTGCATTGTGTTCATTGATG 1714 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 | |||||||| ||||| | ||| | | || ||| | | ||||| ||||||| Sbjct 1715 AAATTGATGCAGTGGGGAGGCAGAGAGGGGCAGGTCTTGGAGGTGGGAATGATGAGAGAG 1774 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 | ||||| || ||||| || | || ||||||||||| || Sbjct 1775 AGCAAACCATCAATCAGCTGTTGACAGAGATGGATGGATT 1814 >seq686278 Length=2433 Score = 107 bits (118), Expect = 2e-18 Identities = 272/412 (66%), Gaps = 4/412 (1%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| || | |||||||||| || | ||| || || || ||| Sbjct 965 GTGGAGTTTCTGAAAAAGCCCGAGAGATTCACTGCAGTTGGAGCTCGCATTCCTAAAGGT 906 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||||| | || ||||| || || ||||| || || || || || || ||| Sbjct 905 GTTCTTCTTGTTGGCCCTCCAGGAACTGGGAAGACTCTGCTAGCTAAGGCAATTGCTGGT 846 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| || ||| ||||| || ||| | | | ||||| ||||||||||||||| Sbjct 845 GAAGCAGGTGTTCCATTTTTCTCTATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGT 786 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || ||||| || || || ||||| || | | ||| || ||| || || ||| Sbjct 785 GTTGGTGCATCTAGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCTCCCTGCATT 726 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAG 175534 || || ||||||| |||||||| || || ||| | | |||| | | | | || Sbjct 725 GTATTTGTTGATGAAATTGATGCTGTTGGGCGCCAAAGAGGAACTGGAATTGGAGG--AG 668 Query 175535 CAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACA 175594 |||||| || || |||||||| |||| || || | || || |||||||| ||||| Sbjct 667 GAAATGATGAAAGGGAACAAACTCTTAACCAGCTTTTGACTGAAATGGATGGTTTTGAAG 608 Query 175595 ATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | ||||| || | |||||||| |||||||| | | || || ||||| Sbjct 607 GAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGA 556 >seq5092 Length=1596 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 ||||||| ||| | || |||||||||| ||||||||||||||| | |||||| | | Sbjct 634 CGGGACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCCTATCTCCTGAAG 693 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 | | || | | | |||| || ||| ||||||| ||| | || | | || || Sbjct 694 ATTCAAGGGAAGGTTGTAGAAAGGCCTCAGCACATGTTGATGAGAGTTTCTGTTGGAATT 753 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| ||| ||||||||||||| | | |||||| | ||||| || || |||| Sbjct 754 CACAAGGATGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTC 813 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | ||| || |||| || || |||||||| || |||||||| || || Sbjct 814 ACTCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCA 860 >seq681135 Length=1827 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| ||||| ||||| | || || || || ||||| || |||||||||||||| | Sbjct 731 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCT 672 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||| | || | ||| | ||||| || ||||||||||| || || |||||||||| Sbjct 671 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATG 612 Query 65189 AACTTATTTCCCGAGATGAGGG 65210 | | || || ||||| ||||| Sbjct 611 AGTTAATCTCGCGAGACGAGGG 590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590931085140000