Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq516297 241 2e-58 seq551508 239 5e-58 seq545415 145 9e-30 seq717558 131 2e-25 seq493281 91.5 2e-13 seq455454 86.0 8e-12 seq161073 82.4 9e-11 >seq516297 Length=515 Score = 241 bits (266), Expect = 2e-58 Identities = 363/515 (70%), Gaps = 1/515 (0%) Strand=Plus/Plus Query 7903 GGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTGTTTAAT 7962 ||||| || || ||||| | ||||||||||||||||||||| | ||| || | |||| Sbjct 2 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTTATA 61 Query 7963 ACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGTTAAAGTTA 8022 | ||| || | ||| ||| | ||| | | |||||| | |||||||| || || Sbjct 62 ATATCAGCCTAAGTATTAATTACACAACCTTGACTATCAACTATAGATTGGTTGAAATTG 121 Query 8023 AATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACA 8082 || || || |||| || | || ||| ||||| | || | | ||||| | || ||| Sbjct 122 AAACCATTTAGGTAGAAAGTCAGAGTGTTGATACCTAAAGCAATGAACCAGATACCTACT 181 Query 8083 ACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAACGATGCATACTGG 8142 | || | | | | |||||||| || | | | | || || || ||||| ||| Sbjct 182 ATAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGAGAATTATTGAATATAGCATATTGG 241 Query 8143 AAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGA 8202 || || |||| |||| | || ||||||||||| ||||||||| || ||||| |||||| Sbjct 242 AAAATCAATCGACCAGAATAACCATGAGCAGCCGTAATATTATAAGTTTCTTCATCTTGA 301 Query 8203 CCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGAT 8262 | || | ||||| ||| ||| || | ||| | || || || || | | ||| Sbjct 302 TCGAATGTGTAACCTACATTCGCAGATTCATTTTCTATGGTTTCCCTAATCAAACTAGAG 361 Query 8263 GTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCT 8322 || || || ||||| |||||| ||||||| || || ||||| || | ||| ||| || Sbjct 362 GTTACCAATGAACCATGCATAACACTGAATAGGGAACCACCAAATACACCAACTATGCC- 420 Query 8323 GCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTA 8382 ||| ||||| | |||||||| ||||| ||||| || | |||||| | ||||||||| Sbjct 421 AACATGTGGAATGAGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATGAAGTTG 480 Query 8383 AACGTACCAGAAATACCTAGAGGCATTCCATCAGA 8417 || |||||||| || ||||||||||| |||||||| Sbjct 481 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 515 >seq551508 Length=510 Score = 239 bits (264), Expect = 5e-58 Identities = 354/497 (71%), Gaps = 6/497 (1%) Strand=Plus/Minus Query 8054 TACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG--AAG 8111 |||| | || ||| ||||| | || ||| || || | | ||| |||||||| | ||| Sbjct 510 TACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATTTAAAG 451 Query 8112 A-CTTCTACTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAG 8170 | | | | | ||| |||| | ||||| ||||| || |||| ||||| || || ||| Sbjct 450 AACATGAATTATTG--AAACTA-GCATATTGGAATATCAATCGGCCAAAATAACCTGGAG 394 Query 8171 CAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACT 8230 |||| ||||||||||| || ||||| |||||||| || || ||||| || ||| | Sbjct 393 CAGCCACAATATTATAAGTTTCTTCCTCTTGACCGAATTTGTAACCTGCATTAGCAGATT 334 Query 8231 CTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGA 8290 | | || || || || || || | | ||| || || || ||||| |||||||| |||| Sbjct 333 CATTTTTTGTGGTTTCCCTTATCAAACTAGAGGTTACCAAGGAACCATGCATAGCTCTGA 274 Query 8291 AGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGT 8350 | || || || ||||| | ||| ||||| || ||| ||||| || |||||||| |||| Sbjct 273 ATAGGGAACCGCCGAATACACCAGCTACATCTAACATGTGGAATGGGTGCATAAGGATGT 214 Query 8351 TATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTC 8410 | ||||| | |||||||| | ||||||||| || |||||||| || |||||||||| | Sbjct 213 TGTGCTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTTCTAGAGGCATAC 154 Query 8411 CATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATA 8470 ||||| | || || ||||||| ||| || | ||||| | || |||||| | | Sbjct 153 CATCATAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGCAGTAGCAGCTGCAA 94 Query 8471 CTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCC 8530 | ||||| |||||| ||| ||||| || | |||| | | ||| | | |||| Sbjct 93 CAGGAGCTGAATATGCAACAACAATCCAAGGGCGCATAGCCAGACGGAAACTAAGTTCCC 34 Query 8531 ACTGTCTACCCATGTAA 8547 ||| | |||||||||| Sbjct 33 ACTCACGACCCATGTAA 17 >seq545415 Length=298 Score = 145 bits (160), Expect = 9e-30 Identities = 212/297 (71%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 7912 TGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTGTTTAATACGTCACCC 7971 || ||||| | ||||||||||||||||||||| | ||| || | ||| | | ||| || Sbjct 296 TGAGCATTACATTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAAAATCAGCC 237 Query 7972 CATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGTTAAAGTTAAATCCGTTA 8031 || ||| ||| | ||| | |||||| | ||||||||||| || || || || Sbjct 236 CAAGTATTAATTACACGACCTTGGCTATCAACTATAGATTGGTTAAAATTGAAACCATTT 177 Query 8032 AGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAAT 8091 ||||| || | ||| |||| ||||| | || | | ||||| | || ||| || | | Sbjct 176 AGGTTGAAAGTCATAGTGCCGATACCTAAAGCAATGAACCAGATACCTACTACAAGCCAA 117 Query 8092 GTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGT-TAAACGATGCATACTGGAAGATTAA 8150 | ||| | |||||| || | | | | || | |||| | ||||| | |||||| || Sbjct 116 GCAGCTATGAAGAAATGTAAAGAACGAGAATTATAGAAACTA-GCATATTAGAAGATCAA 58 Query 8151 TCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAA 8207 || ||||| || ||||||||||| ||||||||||| || ||||| |||||||| || Sbjct 57 TCAGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCGAA 1 >seq717558 Length=1667 Score = 131 bits (144), Expect = 2e-25 Identities = 273/401 (68%), Gaps = 12/401 (3%) Strand=Plus/Minus Query 8020 TTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACAT 8079 || || || || ||||| || ||||| |||| || || | || ||| ||| | | || | Sbjct 1429 TTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATGCCTAAAGTAGTGAACTAGATACCT 1370 Query 8080 ACAACTGGGAATGTAGCGAG----GAAGAAGTG---AAGACTTCTACTGTTGTTAAACGA 8132 || || | | ||||| || |||||| || || | | | | ||| |||| | Sbjct 1369 ACTACAGTCCAAGTAGCTAGCTGGGAAGAAATGTAAAAAATGTGAATTATTG--AAACTA 1312 Query 8133 TGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTC 8192 ||||| ||| | | |||| ||||| || |||| | || | |||||| |||| || || Sbjct 1311 -GCATATTGGTA-ACCAATCGGCCAAAATAACCATAATCAACCACAATAGTATAAGTTTC 1254 Query 8193 TTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGAT 8252 ||| ||||||||||| | ||||| | || || | || | || || || | || || Sbjct 1253 TTCCTCTTGACCAAATATTTAACCTTCATTAGGATATTCATTTTTTGTGGTTACCCT-AT 1195 Query 8253 TAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACC 8312 | | | | || || |||||||| |||||| || | || | || || ||||| ||||| Sbjct 1194 CAAACTAAAGGTTACCAAAGAACCATGCATAACATTAAATGGGGAACCTCCGAATATACC 1135 Query 8313 TGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAA 8372 ||| | ||| ||||| | |||||||| ||||| | ||||| |||||| | Sbjct 1134 AAGTACAACGAACATGTGGAATGAGTGCATAAGGATGTTGCATTTTGCTTAGAATACAAT 1075 Query 8373 CATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCAT 8413 |||||||||||| || || ||| ||||||||| |||| Sbjct 1074 CATGAAGTTAAAAGTGGCACTAATTACTAGAGGCAAACCAT 1034 >seq493281 Length=200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 8538 ACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCC 8597 |||||||||| || | |||| | |||||| | | || | || ||| ||||| || Sbjct 8 ACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCACC 67 Query 8598 GTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAAT 8657 || || ||||| ||||| | | | |||||| | || || || ||||| || || || Sbjct 68 ATTGTATAACCATTCATCAACGGATGTTGCTTCCTATATTGGGTAAAAGTGCAAACCTAT 127 Query 8658 AGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACC 8717 ||| |||| |||| || ||||||||||| || ||||||||||| | | || || Sbjct 128 AGCTGCAGAAGTAGGAATGATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGATCC 187 Query 8718 TGCAACAGGTTCA 8730 | |||||||||| Sbjct 188 AGAAACAGGTTCA 200 >seq455454 Length=251 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 8263 GTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCT 8322 || || || |||||||||||| ||||||| || || || |||| | ||| ||| ||| Sbjct 110 GTTACCAAGGAACCGTGCATAACACTGAATAGGGAACCGTCGAATACACCAACTAAGCCT 51 Query 8323 GCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| || |||||||| ||||| ||||| || |||||||| Sbjct 50 AACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 4 >seq161073 Length=246 Score = 82.4 bits (90), Expect = 9e-11 Identities = 165/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 8375 TGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAA 8434 ||||||| || |||||||| || ||||||||||| |||||||| || || | ||||| Sbjct 246 TGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTAACCAA 187 Query 8435 ATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGA 8494 ||| || | ||||| || || || ||| | | ||||| |||||| ||| | Sbjct 186 TTGGGTAGATCAAGAAAACAGCAGTAGTAGCTGCAATAGGAGCTAAATATGCAACAACAA 127 Query 8495 TCC-ATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAA 8553 ||| ||||| |||||||| || | | ||| ||| | |||||||||| || Sbjct 126 TCCAATGGT-GCATACCTAGATGGAAACTAAGTTCCTACTCACGACCCATGTAAAAAGCT 68 Query 8554 ATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCA 8613 | |||| | | |||| | | || | || ||| || || || || || ||||| ||| Sbjct 67 ACACCAAGTAAGTAGTGTAGAACAATTAGCTCATAAGGGCCACCATTGTATAACCATTCA 8 Query 8614 TC 8615 || Sbjct 7 TC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610041538035000