Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq551508 277 5e-70 seq516297 235 2e-57 seq545415 192 2e-44 seq717558 120 9e-23 seq161073 98.7 3e-16 seq753951 80.6 8e-11 >seq551508 Length=510 Score = 277 bits (306), Expect = 5e-70 Identities = 353/486 (73%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||||||||| || |||||||||||||| | || || | ||| | || ||||| |||| Sbjct 17 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGT 76 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||||||| || ||||| |||||| | ||| | | || || |||| || Sbjct 77 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCA 136 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || |||| ||||| |||||| | | || || || || ||||||| |||| | || Sbjct 137 AGGAAGCTTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGT 196 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 ||||||| ||||||||| || |||||||| || || |||||| | | ||| || || || Sbjct 197 ATTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGT 256 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| || || | ||| |||||||| ||| | |||| || || | || | Sbjct 257 ATTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAG 316 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || || || | | || || |||||||| || |||||||||||||| || Sbjct 317 GGAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAAC 376 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| |||||||| ||||||| || |||||||| || | || |||||||||||||| || Sbjct 377 TTATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTT 436 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 |||||||| || | | ||||||| || ||||| |||||||| |||||||| ||||| Sbjct 437 CAATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 496 Query 42040 TGCTGC 42045 |||| Sbjct 497 CACTGC 502 >seq516297 Length=515 Score = 235 bits (260), Expect = 2e-57 Identities = 362/515 (70%), Gaps = 1/515 (0%) Strand=Plus/Minus Query 41690 TCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCT 41749 ||||||| |||||| | || || || || || ||||||| |||| | || ||| ||||| Sbjct 515 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCT 456 Query 41750 GAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGG 41809 |||||||| || |||||||| | || |||||| ||| | | || ||||||||||| Sbjct 455 GAGCACAACATCCTTATGCACTCATTCCACATGTTGGCA-TAGTTGGTGTATTTGGTGGT 397 Query 41810 AGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACT 41869 | ||| || |||||| ||| |||| || || | ||| | || || | Sbjct 396 TCCCTATTCAGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATA 337 Query 41870 GAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATT 41929 ||| | | || ||| ||||||| || | |||||| ||||| ||||| |||||| Sbjct 336 GAAAATGAATCTGCGAATGTAGGTTACACATTCGATCAAGATGAAGAAACTTATAATATT 277 Query 41930 GTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCC 41989 |||||||| || |||| |||||| | || ||||||||||||| || |||||||| Sbjct 276 ACGGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTCT 217 Query 41990 CGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTT 42049 ||| | | |||||||| || | ||| |||||| | |||||||| ||||| ||| | Sbjct 216 CGTTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTTA 157 Query 42050 GGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCT 42109 || | || || ||||| || | ||||||||||| || ||||||||| | | | | Sbjct 156 GGTATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGAT 97 Query 42110 GCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTT 42169 | | || || || || || | |||||| ||| | || ||||| |||||||| | Sbjct 96 AGTCAAGGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGTATG 37 Query 42170 GAGGTGATGCATGAGCGGAACGCACACAACTTCCC 42204 || || |||||||| || || || || || ||||| Sbjct 36 GAAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq545415 Length=298 Score = 192 bits (212), Expect = 2e-44 Identities = 213/284 (75%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 41900 TTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTT 41959 || |||||||||||||| ||||| |||||||| |||||||| || |||||||| | | Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 41960 ATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGG 42019 |||||| |||||||||| || ||||||| ||| | | |||||||| | ||||| ||| Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 42020 CCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAAT 42079 | ||| |||||||| ||||| ||| | || | || ||| |||||||| | ||| Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 42080 GGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCT 42139 |||||||| |||||||||||| | | | | | || | || || || || |||||| Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGGCT 240 Query 42140 GACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGA 42183 || || | |||||||| |||||||| | || || |||||||| Sbjct 241 GATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 284 >seq717558 Length=1667 Score = 120 bits (132), Expect = 9e-23 Identities = 148/201 (74%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||| | ||||||||||||||||| ||||| | |||||| | || | | || |||||| Sbjct 1230 GGTTAAATATTTGGTCAAGAGGAAGAAACTTATACTATTGTGGTTGATTATGGTTATTTT 1289 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTT---- 42006 || | | || | |||||||||||| || |||||||| | | | | |||||||| Sbjct 1290 GG-CCGATTGGTTACCAATATGCTAGTTTCAATAATTCACATTTTTTACATTTCTTCCCA 1348 Query 42007 TCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGC 42066 || ||| | ||| |||| |||||||| | ||| || | | ||| | || ||||| Sbjct 1349 GCTAGCTACTTGGACTGTAGTAGGTATCTAGTTCACTACTTTAGGCATCAGCACTATGGC 1408 Query 42067 TTTCAACTTGAATGGTTTCAA 42087 ||||||| | ||||||||||| Sbjct 1409 TTTCAACCTAAATGGTTTCAA 1429 >seq161073 Length=246 Score = 98.7 bits (108), Expect = 3e-16 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 41490 TTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTG 41549 ||||||||||| | ||||| || || || | | || | || | |||| | | ||| Sbjct 4 TTGATGAATGGTTATACAATGGTGGCCCTTATGAGCTAATTGTTCTACACTACTTACTTG 63 Query 41550 GCGT--CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCC 41607 | || |||| ||||||||| || |||| ||||||||| | | ||||| ||| | Sbjct 64 GTGTAGCTTT--TTACATGGGTCGTGAGTAGGAACTTAGTTTCCATCTAGGTATGCACCA 121 Query 41608 CTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTA 41667 ||||| ||||||| || | |||||| | || ||| | |||||||| ||| | | || Sbjct 122 TTGGATTGTTGTTGCATATTTAGCTCCTATTGCAGCTACTACTGCTGTTTTCTTGATCTA 181 Query 41668 TCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAA 41727 || |||| | || |||||||||| |||||| | || || || || || ||||| Sbjct 182 CCCAATTGGTTAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAA 241 Query 41728 CTACA 41732 || || Sbjct 242 CTTCA 246 >seq753951 Length=5828 Score = 80.6 bits (88), Expect = 8e-11 Identities = 144/208 (69%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 41574 AGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTC 41633 ||||||||||||| | | | |||| ||| | || ||||| ||||| | || || ||| Sbjct 1779 AGTGGGAACTTAGATTTTGTCTAGATATGCGTCCTTGGATTGTTGTTACATATTCAACTC 1720 Query 41634 CTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTT-GGACAGGGCTCTTTTTCT 41692 ||| | | | | | || ||| ||| ||| | | || | || || | |||||| Sbjct 1719 TTGTTGTAGTTACTATTGTTGTTTTC-TTGATCAACCTAATCGGTCAATGAAACTTTTCT 1661 Query 41693 GATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAG 41752 ||| |||| | | || | || || || ||||||| |||| | || |||||||||||| Sbjct 1660 AATGGTATGTCTCTAGGACTTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 1601 Query 41753 CACAATATTCTTATGCATCCTTTTCACA 41780 ||| |||| |||||| || || |||| Sbjct 1600 TACATCATTCCTATGCACCCATTCCACA 1573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144901543187000