Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq516297 271 2e-68 seq551508 269 8e-68 seq545415 194 5e-45 seq616439 145 2e-30 seq717558 118 3e-22 seq493281 93.3 1e-14 seq753951 80.6 8e-11 >seq516297 Length=515 Score = 271 bits (300), Expect = 2e-68 Identities = 370/515 (72%), Gaps = 1/515 (0%) Strand=Plus/Minus Query 42745 TCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCT 42804 || ||||| |||||||| || || || ||||| |||||||||||| | || ||| ||||| Sbjct 515 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCT 456 Query 42805 GAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGG 42864 || || ||||| |||||||| | ||||| ||| |||| | | || ||||||||||| Sbjct 455 GAGCACAACATCCTTATGCACTCATTCCACATG-TTGGCATAGTTGGTGTATTTGGTGGT 397 Query 42865 TCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACT 42924 || | ||| | |||||||||| | || |||||| | | | | ||||| | Sbjct 396 TCCCTATTCAGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATA 337 Query 42925 GAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATT 42984 ||||| ||| ||| || |||| |||| |||||| || || |||||||| ||| Sbjct 336 GAAAATGAATCTGCGAATGTAGGTTACACATTCGATCAAGATGAAGAAACTTATAATATT 277 Query 42985 GTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGT 43044 || || |||||||| | ||| || | || ||||||||||| || |||||| | Sbjct 276 ACGGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTCT 217 Query 43045 CGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTT 43104 || ||||| || ||||| || | |||||||| | || || || ||||||| | || | Sbjct 216 CGTTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTTA 157 Query 43105 GGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGAT 43164 || ||| ||| || | || || | |||||||| || || |||||||| | |||||| Sbjct 156 GGTATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGAT 97 Query 43165 AATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTT 43224 | ||| | ||| || ||||| |||||||||| | |||||||| |||||||| | Sbjct 96 AGTCAAGGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGTATG 37 Query 43225 GAGGTGATGCACGAGCGGAATGCACATAACTTCCC 43259 || || ||||| || || ||||| ||||| ||||| Sbjct 36 GAAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq551508 Length=510 Score = 269 bits (298), Expect = 8e-68 Identities = 354/488 (73%), Gaps = 2/488 (0%) Strand=Plus/Plus Query 42615 TTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGT 42674 |||| |||| || || ||||||||| | ||| || | ||| | || ||||| |||| Sbjct 17 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGT 76 Query 42675 TGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCA 42734 ||| || || || ||||| || || || ||||| | ||| | |||| ||| |||| || Sbjct 77 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCA 136 Query 42735 AGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGT 42794 ||| |||| ||||| |||||||| | || || ||||| |||||||||||| | || Sbjct 137 AGGAAGCTTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGT 196 Query 42795 CTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGT 42854 ||||||| ||| || ||||| |||||||| || ||||| ||| | | ||| || || || Sbjct 197 ATTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGT 256 Query 42855 ATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCG 42914 ||| || || || | ||| ||||||||||||| | || |||||| | | | | Sbjct 257 ATTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAG 316 Query 42915 TGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGAC 42974 ||||| || |||| ||| ||| || ||||| |||||||||||||| || || Sbjct 317 GGAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAAC 376 Query 42975 TTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTT 43034 |||||| ||||| || || | ||||| ||||| || | || ||||||||||| | ||| Sbjct 377 TTATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGC-TAGTT 435 Query 43035 T-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGT 43093 | |||||| | ||||| | ||||| || || |||||||| || || || || |||| Sbjct 436 TCAATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGT 495 Query 43094 TCACTTCT 43101 ||||| || Sbjct 496 TCACTGCT 503 >seq545415 Length=298 Score = 194 bits (214), Expect = 5e-45 Identities = 224/299 (75%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 42955 TTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTT 43014 |||||||||||||| || |||||||| ||||| || || |||||||| ||||| | | Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 43015 ATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTG 43073 |||||| ||||||| | |||| ||||| ||| ||||| || ||||| | || ||||| Sbjct 61 ATCTTCTAATATGC-TAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTG 119 Query 43074 GCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAA 43133 || || || || || ||||||| | || | || || | |||||| | || ||| | || Sbjct 120 GCTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAA 179 Query 43134 TGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGC 43193 |||||| || ||||||||||| | ||||||| || || ||| || ||||||||| Sbjct 180 TGGTTTCAATTTTAACCAATCTATAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGGC 239 Query 43194 TGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATA 43252 |||| || | || ||||| |||||||| | || || ||||| || | ||||| |||| Sbjct 240 TGATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCATA 298 >seq616439 Length=1776 Score = 145 bits (160), Expect = 2e-30 Identities = 225/316 (71%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 42748 GATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAA 42807 |||| |||||| | || || || |||| |||||||||||| | || ||| ||| ||| Sbjct 191 GATGATATGCCTTTAGGAATCTCTAGTACTTTCAACTTCATGATTGTATTCTAGGTTGAG 250 Query 42808 CATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCG 42867 || ||||| |||||||| | ||||| || | ||||| | || ||||||| || ||| Sbjct 251 CACAACATCCTTATGCACCTATTCCACTTGTTAGGTGTAGTTGGTGTATTTGATGAGTCT 310 Query 42868 TTGTTCTCAGCTATGCATGGTAGTCTT-GTCACCTCTTCTCTTGTGCGTGAAACGACTGA 42926 || ||| | |||||||||| |||| || |||| | | | | ||||| || | Sbjct 311 TTATTCAATGTTATGCATGGT-TTCTTGGTAACCTTTAGTTTGATCAAGGAAACCACAAA 369 Query 42927 AAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGT 42986 ||| ||| ||||| || ||||| |||| |||||| || || |||||||| || || Sbjct 370 AAATGAATTTGTTAATTAAGGTTACAAATTCGATCAAGATGAAGAAACTTATAATATCGT 429 Query 42987 TGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTC 43045 | || |||||||| ||| | || | || || ||||||| || |||| ||| | || Sbjct 430 AGTTGCTCATGGTTATTTTAGTCGATTGATTTTTCAATATG-GTAGTTTGGATATTTCTC 488 Query 43046 GCTCTTTGCACTTCTT 43061 | ||||| || ||||| Sbjct 489 GTTCTTTACATTTCTT 504 >seq717558 Length=1667 Score = 118 bits (130), Expect = 3e-22 Identities = 388/596 (65%), Gaps = 9/596 (2%) Strand=Plus/Plus Query 42552 ATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTT 42611 |||| | |||||||| || | |||| |||| | || | || || | | ||||| Sbjct 838 ATGGTTATACAATGGTGGTCTTTATGAGCTAATTGTTCTACAATTTTTACTTGGTATAGC 897 Query 42612 CTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTT 42671 | |||| |||| || || ||| | ||| | || || || ||| | || | || | | Sbjct 898 TTGTTACATGGGTCGTGAGTGGAAGCTTAGTTTCCATCTAGGTATGCGCCCTTAGAACGT 957 Query 42672 TGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGG 42731 |||| | || ||| | ||| | | | |||| | ||| | ||| ||| |||| Sbjct 958 TGTTACATATTCTTTCT-TGTTACATCTACTACTGTTATTTTCTTAATCTGCCCAATTGG 1016 Query 42732 GCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTT 42791 || | ||||| |||| ||||||| | ||| | || || ||||||||| | Sbjct 1017 TTAAAGAAATTTTTTTAATGGTTTGCCTCTAGTAATTAGTGCCACTTTTAACTTCATGAT 1076 Query 42792 GGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGG 42851 || ||| | || || ||||| |||||||| | ||||| ||| | | ||| || Sbjct 1077 TGTATTCTAAGCAAAATGCAACATCCTTATGCACTCATTCCACATGTTCGTTGTACTTGG 1136 Query 42852 CGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGT 42911 |||| || || || || | |||||||||| | | || |||| | | ||| Sbjct 1137 TATATTCGGAGGTTCCCCATTTAATGTTATGCATGGTTCTTTGGTAACCTTTAGT-TTGA 1195 Query 42912 GCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGA 42971 | | ||| || |||| ||| | ||| | || || | || ||||||||||| || Sbjct 1196 TAGGGTAACCACAAAAAATGAATATCCTAATGAAGGTTAAATATTTGGTCAAGAGGAAGA 1255 Query 42972 GACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTC 43031 ||||||| ||||| | | ||||||| ||||| | | || | ||||||||| | Sbjct 1256 AACTTATACTATTGTGGTTGATTATGGTTATTTTGG-CCGATTGGTTACCAATATGC-TA 1313 Query 43032 GTTT-AATAATAGTCGCTCTTTGCACTTCTT----TCTTGCCGCTTGGCCCGTTGTGGGG 43086 |||| |||||| | | ||| || ||||| || || ||||| | || || || Sbjct 1314 GTTTCAATAATTCACATTTTTTACATTTCTTCCCAGCTAGCTACTTGGACTGTAGTAGGT 1373 Query 43087 ATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAA 43142 || | ||||||| || | ||| |||| |||||||| || ||| | |||||||| || Sbjct 1374 ATCTAGTTCACTACTTTAGGCATCAGCACTATGGCTTTCAACCTAAATGGTTTCAA 1429 >seq493281 Length=200 Score = 93.3 bits (102), Expect = 1e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 42432 TGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCC 42491 ||||||||| ||||| ||||| || ||||| ||||| || |||||||||||| || | || Sbjct 200 TGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCC 141 Query 42492 TAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGA 42551 || | || || || | || || || | || | |||||| | || |||| || Sbjct 140 TACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATGA 81 Query 42552 ATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTC 42597 |||| | |||||||| || |||||| |||| | || | |||||| Sbjct 80 ATGGTTATACAATGGTGGTCCTTATAAGCTAATTGTTCTACACTTC 35 >seq753951 Length=5828 Score = 80.6 bits (88), Expect = 8e-11 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 42742 TTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAG 42801 ||||| |||| ||| |||| || |||| ||||| |||||||||||| | || |||||| Sbjct 1666 TTTTCTAATGGTATGTCTCTAGGACTTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 1607 Query 42802 GCTGAACATAACATTCTTATGCATCCTTTCCA 42833 ||||| | | ||||| |||||| || ||||| Sbjct 1606 GCTGAGTACATCATTCCTATGCACCCATTCCA 1575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142244021231500