Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq516297 233 6e-57 seq551508 203 9e-48 seq545415 178 4e-40 seq717558 114 4e-21 seq161073 89.7 2e-13 >seq516297 Length=515 Score = 233 bits (258), Expect = 6e-57 Identities = 361/513 (70%), Gaps = 2/513 (0%) Strand=Plus/Plus Query 25889 GGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAAT 25948 ||||| |||||||||||||| || ||||||||||| | || |||||||| || |||| Sbjct 3 GGAAA-TTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTTATA 61 Query 25949 ACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTTA 26008 | ||||||| | ||| |||| || | | ||| |||| || ||||| || || Sbjct 62 ATATCAGCCTAAGTATTAATTACACAACCTTGACTATCAACTATAGATTGGTTGAAATTG 121 Query 26009 AAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACA 26068 ||||||||||||| || | || ||| |||||| | || | | ||| || || || Sbjct 122 AAACCATTTAGGTAGAAAGTCAGAGTGTTGATACCTAAAGCAATGAACCAGATACCTACT 181 Query 26069 ACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGA 26128 | ||||||| | | || |||||||| | |||||| ||||| || | ||||| || Sbjct 182 ATAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGAGAATTATTGAATATAGCATATTGG 241 Query 26129 AAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGC 26188 ||||| |||| ||| | || || || ||||| ||||||||| || ||||||||||| Sbjct 242 AAAATCAATCGACCAGAATAACCATGAGCAGCCGTAATATTATAAGTTTCTTCATCTTGA 301 Query 26189 CCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAA 26248 | || | || || |||| || | | ||| | ||||| ||| | || Sbjct 302 TCGAATGTGTAACCTACATTCGCAGATTCATTTTCTATGGTTTCCCTAATCAAACTAGAG 361 Query 26249 GTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCA 26308 || ||||| || |||||| || ||| || | ||||| || || ||| | | ||| Sbjct 362 GTTACCAATGAACCATGCATAACACTGAATAGGGAACCACCAAATACACCAACTATGCCA 421 Query 26309 GCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTA 26368 ||| ||||||| |||||| || || || || || || | |||||| | ||| ||||| Sbjct 422 -ACATGTGGAATGAGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATGAAGTTG 480 Query 26369 AAAGTACCAGAGATACCAAGAGGCATTCCATCA 26401 |||||||||||||| || |||||||| |||||| Sbjct 481 AAAGTACCAGAGATTCCTAGAGGCATACCATCA 513 >seq551508 Length=510 Score = 203 bits (224), Expect = 9e-48 Identities = 333/480 (69%), Gaps = 0/480 (0%) Strand=Plus/Minus Query 26040 TACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAG 26099 |||| | || || | ||| || || || || ||||||| ||| || ||||||| | || Sbjct 510 TACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATTTAAAG 451 Query 26100 AACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAG 26159 ||| ||||| ||||| ||||| || || || |||| ||||| || || | |||| Sbjct 450 AACATGAATTATTGAAACTAGCATATTGGAATATCAATCGGCCAAAATAACCTGGAGCAG 391 Query 26160 CGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTT 26219 | ||||||||||| || ||||| ||||| || || || || || ||| || | | Sbjct 390 CCACAATATTATAAGTTTCTTCCTCTTGACCGAATTTGTAACCTGCATTAGCAGATTCAT 331 Query 26220 CCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAA 26279 | ||| ||||| || | || || ||||| || |||||||| ||| | Sbjct 330 TTTTTGTGGTTTCCCTTATCAAACTAGAGGTTACCAAGGAACCATGCATAGCTCTGAATA 271 Query 26280 GAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTAT 26339 | | || ||||| || ||||| ||| | ||| |||||||||||||| || || || | Sbjct 270 GGGAACCGCCGAATACACCAGCTACATCTAACATGTGGAATGGGTGCATAAGGATGTTGT 211 Query 26340 GTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCAT 26399 | || | |||||||| | ||| ||||| |||||||||||||| | |||||||| |||| Sbjct 210 GCTCAACCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCAT 151 Query 26400 CACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTG 26459 || ||| || ||||| || | || || | ||||| | || ||| || | | | Sbjct 150 CATAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGCAGTAGCAGCTGCAACAG 91 Query 26460 GTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACT 26519 | |||| ||||||||||| ||||| || | ||| | || | | || |||||||||| Sbjct 90 GAGCTGAATATGCAACAACAATCCAAGGGCGCATAGCCAGACGGAAACTAAGTTCCCACT 31 >seq545415 Length=298 Score = 178 bits (196), Expect = 4e-40 Identities = 218/298 (73%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 25896 TATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAG 25955 |||||||||||| || ||||||||||| | || |||||||| ||||| | | ||||| Sbjct 298 TATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAAAATCAG 239 Query 25956 CCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTTAAAACCAT 26015 |||| ||| |||| || | ||| |||| || |||||||| || ||||||| Sbjct 238 CCCAAGTATTAATTACACGACCTTGGCTATCAACTATAGATTGGTTAAAATTGAAACCAT 179 Query 26016 TTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCC 26075 ||||||| || | ||| |||| |||||| | || | | ||| || || || || ||| Sbjct 178 TTAGGTTGAAAGTCATAGTGCCGATACCTAAAGCAATGAACCAGATACCTACTACAAGCC 119 Query 26076 AAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTA 26135 ||| ||| | |||||||| | |||||| |||| ||||| ||||| | || || | Sbjct 118 AAGCAGCTATGAAGAAATGTAAAGAACGAGAATTATAGAAACTAGCATATTAGAAGATCA 59 Query 26136 ATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAA 26193 ||| ||||| || || || ||||| ||||||||||| || ||||| ||||| || || Sbjct 58 ATCAGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCGAA 1 >seq717558 Length=1667 Score = 114 bits (126), Expect = 4e-21 Identities = 273/408 (67%), Gaps = 10/408 (2%) Strand=Plus/Minus Query 26006 TTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCA 26065 || |||||||||||||| || ||||| |||| ||| || | || || | | | || || Sbjct 1429 TTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATGCCTAAAGTAGTGAACTAGATACCT 1370 Query 26066 ACAACCGGCCAAGTAGCAA----GAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGC 26121 || || | ||||||||| | | |||||||| | | || | ||||| ||||| || Sbjct 1369 ACTACAGTCCAAGTAGCTAGCTGGGAAGAAATGTAAAAAATGTGAATTATTGAAACTAGC 1310 Query 26122 ATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTC 26181 ||| || || |||| ||||| || || | || | |||||| |||| || ||||| Sbjct 1309 ATATTG-GTAACCAATCGGCCAAAATAACCATAATCAACCACAATAGTATAAGTTTCTTC 1251 Query 26182 ATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAAT--A 26239 ||||| ||||| | || || | ||| | | | | | ||| ||| | | || | Sbjct 1250 CTCTTGACCAAATATTTAACCTTCATTAGGATATTCATTTTTTGTGGTTAC-CCTATCAA 1192 Query 26240 AGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCA 26299 | | | | || |||||| || |||||| || || | | || ||||| | ||| Sbjct 1191 ACTAA--AGGTTACCAAAGAACCATGCATAACATTAAATGGGGAACCTCCGAATATACCA 1134 Query 26300 GCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAAC 26359 ||| | ||| ||||||| |||||| || || || || ||||| |||||| | | Sbjct 1133 AGTACAACGAACATGTGGAATGAGTGCATAAGGATGTTGCATTTTGCTTAGAATACAATC 1074 Query 26360 ATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAA 26407 || ||||||||||| || || | ||||||| |||| | |||| Sbjct 1073 ATGAAGTTAAAAGTGGCACTAATTACTAGAGGCAAACCATTAAAAAAA 1026 >seq161073 Length=246 Score = 89.7 bits (98), Expect = 2e-13 Identities = 170/243 (70%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 26363 AAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAA 26422 ||||| |||||||||||||| || |||||||| |||||| ||| || |||| || | Sbjct 244 AAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTAACCAATT 185 Query 26423 GGATAAACTAAGAACACTGCG--AG-AGCTGCGGATAGTGGTGCTGTATATGCAACAAAT 26479 || || | ||||| || || || |||||| |||| | ||| ||||||||||| Sbjct 184 GGGTAGATCAAGAAAACAGCAGTAGTAGCTGCA-ATAG--GAGCTAAATATGCAACAACA 128 Query 26480 ATCC-ATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGC 26538 |||| ||||| ||| ||||| | || |||||| ||| | || || || Sbjct 127 ATCCAATGGT-GCATACCTAGATGGAAACTAAGTTCCTACTCACGACCCATGTAAAAAGC 69 Query 26539 TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTC 26598 ||| || | |||| |||| | | ||| || | ||| || || |||||||||| ||| || Sbjct 68 TACACCAAGTAAGTAGTGTAGAACAATTAGCTCATAAGGGCCACCATTGTATAACCATTC 9 Query 26599 GTC 26601 || Sbjct 8 ATC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146385696260000