Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq516297 208 2e-49 seq551508 185 2e-42 seq616439 132 1e-26 seq545415 118 3e-22 seq161073 104 7e-18 seq753951 95.1 3e-15 seq711014 82.4 2e-11 >seq516297 Length=515 Score = 208 bits (230), Expect = 2e-49 Identities = 360/519 (69%), Gaps = 7/519 (1%) Strand=Plus/Plus Query 40544 AGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAG 40603 ||| || || ||||| ||||| || ||||| ||||||||||| || | | || | Sbjct 1 AGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTTAT 60 Query 40604 AACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAGTT 40663 || ||||||| ||||| ||| || ||| | | || |||| || ||||| || || Sbjct 61 AATATCAGCCTAAGTATTAATTACACAACCTTGACTATCAACTATAGATTGGTTGAAATT 120 Query 40664 AAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAAT 40723 |||||||| |||| |||| || ||| ||||| | | | | ||| || || | Sbjct 121 GAAACCATTTAGGTAGAAAGTCAGAGTGTTGATACCTAAAGCAATGAACCAGATACCTAC 180 Query 40724 AACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTG 40783 | || ||||| | || ||||| |||| | ||| ||| |||||| ||||||||| Sbjct 181 TATAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGAGAATTATTGAATATAGCATATTG 240 Query 40784 AAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTG 40843 || || | || |||| | ||||| || ||||| || |||||||| || | || || Sbjct 241 GAAAATCAATCGACCAGAATAACCATGAGCAGCCGTAATATTATAAGTTTCTTCATCTTG 300 Query 40844 ACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGA---TTGA 40900 | | || | || || ||| |||||| |||| |||| |||| ||| | | || Sbjct 301 ATCGAATGTGTAACCTACATTCGCAGATTCATTTTCTATGGTTTCCCTAATCAAACTAGA 360 Query 40901 GGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAAC 40960 || || ||| | || |||||| || || | | ||||||||| || || | | Sbjct 361 GGT--TACCAATGAA-CCATGCATAACACTGAATAGGGAACCACCAAATACACCAACTAT 417 Query 40961 GCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAA 41020 ||| | ||| ||||||| |||||| || |||||||| || || | ||| |||| |||||| Sbjct 418 GCCAA-CATGTGGAATGAGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATGAA 476 Query 41021 GTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGA 41059 |||||| || ||| |||||||| ||||||||||||||| Sbjct 477 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 515 >seq551508 Length=510 Score = 185 bits (204), Expect = 2e-42 Identities = 311/447 (70%), Gaps = 6/447 (1%) Strand=Plus/Minus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTA 40791 ||||| | || ||||| | || | || ||| ||||| ||||||||| ||||| | Sbjct 474 AAGCAGCTAGGAAGAAATTTAAAGAACATGAATTATTGAAACTAGCATATTGGAATATCA 415 Query 40792 GTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACT 40851 || ||||| ||||| | ||||| || || |||||||| || | || ||||| || | Sbjct 414 ATCGGCCAAAATAACCTGGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCGAATT 355 Query 40852 TATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAA 40908 | || || || |||||| ||| ||||| |||| || | | |||| || Sbjct 354 TGTAACCTGCATTAGCAGATTCATTTTTTGTGGTTTCCCTTATCAAACTAGAGGT--TAC 297 Query 40909 CAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCA 40968 ||||| || |||||||| || | | ||| || || || || || || | | || Sbjct 296 CAAGGAA-CCATGCATAGCTCTGAATAGGGAACCGCCGAATACACCAGCTACATCTAACA 238 Query 40969 TATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATG 41028 | |||||||||||||| || |||||||| || | ||||| |||| |||||||||||| | Sbjct 237 TGTGGAATGGGTGCATAAGGATGTTGTGCTCAACCTGGAATACAATCATGAAGTTGAAAG 178 Query 41029 TTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTA 41088 | ||| |||| ||| ||||||||||||| | || || ||||| | ||| || | | Sbjct 177 TACCAGAGATTTCTAGAGGCATACCATCATAAAAGCTTCCTTGACCAATTGGGTAGATCA 118 Query 41089 AGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCA 41148 |||| | ||| ||| |||| | ||||||| ||||| |||| ||||| || | || Sbjct 117 AGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAACAATCCAAGGGCGCA 58 Query 41149 TACCTAGTCTGTATGAAAGTTCCCACT 41175 || | || | | | ||||||||||| Sbjct 57 TAGCCAGACGGAAACTAAGTTCCCACT 31 >seq616439 Length=1776 Score = 132 bits (146), Expect = 1e-26 Identities = 201/286 (70%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 40777 CATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGC 40836 |||||||||| || | || || ||| ||||| || ||| ||||||| |||||||| || Sbjct 470 CATATTGAAAAATCAATCGACTAAAATAACCATGAGCAACTACGATATTATAAGTTTCTT 411 Query 40837 CTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGA 40896 | || ||| | || || || || || || ||||| ||| ||||| ||| || | Sbjct 410 CATCTTGATCGAATTTGTAACCTTAATTAACAAATTCATTTTTTGTGGTTTCCTTGATCA 351 Query 40897 TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTG 40956 | || || | | || |||||| || || |||| || |||| || || Sbjct 350 AACTAAAGGTTACCAAGAAACCATGCATAACATTGAATAAAGACTCATCAAATACACCAA 291 Query 40957 CAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACA 41016 | || || | || |||||| ||||||| || |||||||| || | | ||| |||| || Sbjct 290 CTACACCTAACAAGTGGAATAGGTGCATAAGGATGTTGTGCTCAACCTAGAATACAATCA 231 Query 41017 TGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 |||||||||| || | | |||||||||||||||| ||||| |||| Sbjct 230 TGAAGTTGAAAGTACTAGAGATTCCTAAAGGCATATCATCATAGAA 185 >seq545415 Length=298 Score = 118 bits (130), Expect = 3e-22 Identities = 206/297 (69%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 40554 TGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATCAGCC 40613 ||||| |||| || ||||| ||||||||||| || | | ||| | || ||||||| Sbjct 296 TGAGCATTACATTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAAAATCAGCC 237 Query 40614 CAAGTAGGAATGACTTTACCATTAGC-GTCTACTACTGACTGGTTAAAGTTAAAACCATT 40672 |||||| ||| || ||| || || || |||| || |||||||| || |||||||| Sbjct 236 CAAGTATTAATTACACGACC-TTGGCTATCAACTATAGATTGGTTAAAATTGAAACCATT 178 Query 40673 GAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAACCGGGAA 40732 ||||| |||| |||||| ||||| | | | | ||| || || | || | | Sbjct 177 TAGGTTGAAAGTCATAGTGCCGATACCTAAAGCAATGAACCAGATACCTACTACAAGCCA 118 Query 40733 AGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTAG 40792 |||| | | ||||| |||| | ||| ||| | ||| |||||||| || || | Sbjct 117 AGCAGCTATGAAGAAATGTAAAGAACGAGAATTATAGAAACTAGCATATTAGAAGATCAA 58 Query 40793 TCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAA 40849 || ||||| ||||| || ||||| || || |||||||| || | || ||||| || Sbjct 57 TCAGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCGAA 1 >seq161073 Length=246 Score = 104 bits (114), Expect = 7e-18 Identities = 172/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 41017 TGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGA 41076 |||||||||| || ||| |||||||| ||||||||||||||| || || | ||| | Sbjct 246 TGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTAACCAA 187 Query 41077 ATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAAT-GGAGCTGTGTATGCCACAAAT 41135 ||| || | ||||| ||||| || |||| |||| |||||| ||||| |||| Sbjct 186 TTGGGTAGATCAAGAAAACAGCAGTAGTAGCTG-CAATAGGAGCTAAATATGCAACAACA 128 Query 41136 ATCC-ATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGC 41194 |||| ||||| ||||||||| | | ||||||| ||| | ||| ||| || Sbjct 127 ATCCAATGGT-GCATACCTAGATGGAAACTAAGTTCCTACTCACGACCCATGTAAAAAGC 69 Query 41195 TACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTC 41254 ||| || | ||| |||| | ||||| || | ||| || || || ||||||| ||| || Sbjct 68 TACACCAAGTAAGTAGTGTAGAACAATTAGCTCATAAGGGCCACCATTGTATAACCATTC 9 Query 41255 GTC 41257 || Sbjct 8 ATC 6 >seq753951 Length=5828 Score = 95.1 bits (104), Expect = 3e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40971 TGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTT 41030 |||||||||||||| ||||| ||| || || ||||| |||| |||||||||||| || Sbjct 1575 TGGAATGGGTGCATAGGAATGATGTACTCAGCCTGGAATACAATCATGAAGTTGAAAGTA 1634 Query 41031 CCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAG 41090 ||| | ||||| || |||||||| ||| || | ||||||| | | | | ||| Sbjct 1635 CCAGAAAGTCCTAGAGACATACCATTAGAAAAGTTTCATTGACCGATTAGGTTGATCAAG 1694 Query 41091 AATACAGCTAGAGCTGCTGACAA-TGGAGCTGTGTATGCCACAAATATCCATGGTCTCAT 41149 || ||| | | || || |||| ||| || |||| |||| ||||| || | ||| Sbjct 1695 AAAACAACAATAGTAACT-ACAACAAGAGTTGAATATGTAACAACAATCCAAGGACGCAT 1753 Query 41150 ACCTAGTCTGTATGAAAGTTCCCACT 41175 | |||| | || ||||||||||| Sbjct 1754 ATCTAGACAAAATCTAAGTTCCCACT 1779 >seq711014 Length=229 Score = 82.4 bits (90), Expect = 2e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 40961 GCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAA 41020 ||| | ||| |||||||||||||| || |||||||| || || ||||| |||| ||||| Sbjct 229 GCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATAATGAA 170 Query 41021 GTTGAATGTTCCACTGATTCCTA 41043 |||||| || ||| |||||||| Sbjct 169 GTTGAAGGTACCAGAGATTCCTA 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142412098395750