Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq551508 300 2e-76 seq516297 275 7e-69 seq545415 152 6e-32 seq616439 150 2e-31 seq717558 147 2e-30 seq455454 107 2e-18 seq753951 105 8e-18 seq161073 86.0 7e-12 seq711014 84.2 2e-11 >seq551508 Length=510 Score = 300 bits (332), Expect = 2e-76 Identities = 354/479 (74%), Gaps = 0/479 (0%) Strand=Plus/Minus Query 67533 GCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAG 67592 |||||||||||||| | || ||||| | ||||| |||||||| | | | | ||| Sbjct 502 GCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATTTAAAGAACATGAA 443 Query 67593 TTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG 67652 || |||||| ||||| ||||| ||||| || || || || || ||||||| ||||| Sbjct 442 TTATTGAAACTAGCATATTGGAATATCAATCGGCCAAAATAACCTGGAGCAGCCACAATA 383 Query 67653 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTA 67712 || ||||| ||||| ||||| ||||| |||||||| || || || | | || Sbjct 382 TTATAAGTTTCTTCCTCTTGACCGAATTTGTAACCTGCATTAGCAGATTCATTTTTTGTG 323 Query 67713 GTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCA 67772 ||||| || || | | ||| || || | ||||| |||||||| || || || ||||| Sbjct 322 GTTTCCCTTATCAAACTAGAGGTTACCAAGGAACCATGCATAGCTCTGAATAGGGAACCG 263 Query 67773 CCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCT 67832 ||||||||||| ||||| | | ||| ||||||||||||||||||||||||||||| | Sbjct 262 CCGAATACACCAGCTACATCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAACC 203 Query 67833 TGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAA 67892 ||||| || | |||| |||| ||||||||||| || | |||||||| | ||| | || Sbjct 202 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAAAAG 143 Query 67893 GAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAG 67952 |||||||| | || |||| |||||| | ||| || || | || ||||| || Sbjct 142 CTTCCTTGACCAATTGGGTAGATCAAGAAAATAGCAGTAGCAGCTGCAACAGGAGCTGAA 83 Query 67953 TATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011 ||||| ||| |||||||| |||||| | |||||| || ||||||||||| |||||| Sbjct 82 TATGCAACAACAATCCAAGGGCGCATAGCCAGACGGAAACTAAGTTCCCACTCACGACC 24 >seq516297 Length=515 Score = 275 bits (304), Expect = 7e-69 Identities = 374/519 (72%), Gaps = 7/519 (1%) Strand=Plus/Plus Query 67373 AGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAG 67432 |||||| || ||||| ||||| || |||||||||||||| ||||| || | || | Sbjct 1 AGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTTAT 60 Query 67433 GATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGGTTGAA 67489 || || ||| ||||| ||| || || |||| ||||| | ||||||||||| Sbjct 61 AATATCAGCCTAAGTATTAATTAC---ACAACCTTGACTATCAACTATAGATTGGTTGAA 117 Query 67490 GTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCA 67549 |||||||| || |||| ||| | || ||| | ||| | ||| |||||||||| | Sbjct 118 ATTGAAACCATTTAGGTAGAAAGTCAGAGTGTTGATACCTAAAGCAATGAACCAGATACC 177 Query 67550 GACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATA 67609 || | ||| | ||| | |||||||| || | | | || || ||||| ||||| Sbjct 178 TACTATAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGAGAATTATTGAATATAGCATA 237 Query 67610 CTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTC 67669 ||||| ||||| ||||| | || ||||||||||| ||| || ||||| ||||| || Sbjct 238 TTGGAAAATCAATCGACCAGAATAACCATGAGCAGCCGTAATATTATAAGTTTCTTCATC 297 Query 67670 TTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGA 67729 ||| |||| ||||||| ||| || || | || | ||||| || || | | Sbjct 298 TTGATCGAATGTGTAACCTACATTCGCAGATTCATTTTCTATGGTTTCCCTAATCAAACT 357 Query 67730 AGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTAC 67789 ||| || || | ||||| |||||| |||| || || |||||||| |||||||| ||| Sbjct 358 AGAGGTTACCAATGAACCATGCATAACACTGAATAGGGAACCACCAAATACACCAACTAT 417 Query 67790 TCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTA 67849 |||| ||| ||||||| ||||||||||||||||||||| || | ||| || | |||| | Sbjct 418 GCCAA-CATGTGGAATGAGTGCATAAGGATGTTGTGCTCAGCCTAGAATACAATCATGAA 476 Query 67850 GTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888 ||| ||||||||||| || || |||||||| | ||||| Sbjct 477 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 515 >seq545415 Length=298 Score = 152 bits (168), Expect = 6e-32 Identities = 214/299 (72%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 67383 TGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCC 67442 ||||| |||| || |||||||||||||| ||||| || | ||| | | || ||| Sbjct 296 TGAGCATTACATTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATAAAATCAGCC 237 Query 67443 CAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGGTTGAAGTTGAAACCG 67499 |||||| ||| || || |||| | ||||| | |||||||| || |||||||| Sbjct 236 CAAGTATTAATTAC---ACGACCTTGGCTATCAACTATAGATTGGTTAAAATTGAAACCA 180 Query 67500 TTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGG 67559 || |||||||| | |||||| | ||| | ||| |||||||||| | || ||| | Sbjct 179 TTTAGGTTGAAAGTCATAGTGCCGATACCTAAAGCAATGAACCAGATACCTACTACAAGC 120 Query 67560 AATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATC 67619 | ||||| | |||||| || | | | || || | |||| ||||| | ||||||| Sbjct 119 CAAGCAGCTATGAAGAAATGTAAAGAACGAGAATTATAGAAACTAGCATATTAGAAGATC 60 Query 67620 AAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAA 67678 || | || || || ||||||||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 59 AATCAGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGACCGAA 1 >seq616439 Length=1776 Score = 150 bits (166), Expect = 2e-31 Identities = 207/287 (72%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 67606 CATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTT 67665 |||| || || ||||| |||| || || ||||||||| | || || || ||||| |||| Sbjct 470 CATATTGAAAAATCAATCGACTAAAATAACCATGAGCAACTACGATATTATAAGTTTCTT 411 Query 67666 CTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAA 67725 | ||||| |||| |||||||| || || | || | | || ||||| |||| | Sbjct 410 CATCTTGATCGAATTTGTAACCTTAATTAACAAATTCATTTTTTGTGGTTTCCTTGATCA 351 Query 67726 GAGAAGAAGTAAC-AAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCT 67784 | | | || || |||| |||| |||||| || | || | || || | |||||||| Sbjct 350 AACTAAAGGTTACCAAGA-AACCATGCATAACATTGAATAAAGACTCATCAAATACACCA 292 Query 67785 GCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAAC 67844 |||| || | || |||||| |||||||||||||||||||||| | | ||| || | | Sbjct 291 ACTACACCTAACAAGTGGAATAGGTGCATAAGGATGTTGTGCTCAACCTAGAATACAATC 232 Query 67845 ATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAA 67891 ||| |||| ||||||| ||| || || | |||||| | ||| |||| Sbjct 231 ATGAAGTTGAAAGTACTAGAGATTCCTAAAGGCATATCATCATAGAA 185 >seq717558 Length=1667 Score = 147 bits (162), Expect = 2e-30 Identities = 350/525 (67%), Gaps = 7/525 (1%) Strand=Plus/Minus Query 67491 TTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAG 67550 |||||||| || |||||||| |||||||| | || | | ||||||| |||| | Sbjct 1429 TTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATGCCTAAAGTAGTGAACTAGATACCT 1370 Query 67551 ACCACAGGGAATGCAGCAAG----GAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGC 67606 || |||| | | ||| || |||||| || | | ||| || |||||| || Sbjct 1369 ACTACAGTCCAAGTAGCTAGCTGGGAAGAAATGTAAAAAATGTGAATTATTGAAACTAGC 1310 Query 67607 ATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTC 67666 ||| ||| | | ||| || || || || |||| | || | ||||| | ||||| ||||| Sbjct 1309 ATATTGGTA-ACCAATCGGCCAAAATAACCATAATCAACCACAATAGTATAAGTTTCTTC 1251 Query 67667 TTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAG 67726 ||||| || || | ||||| | || | | || | | || ||| | || || | Sbjct 1250 CTCTTGACCAAATATTTAACCTTCATTAGGATATTCATTTTTTGTGGTTACCCT-ATCAA 1192 Query 67727 AGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGC 67786 | | | || || | |||||| |||||| || |||| | ||||| ||||||| ||| Sbjct 1191 ACTAAAGGTTACCAAAGAACCATGCATAACATTAAATGGGGAACCTCCGAATATACCAAG 1132 Query 67787 TACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACAT 67846 ||| | | ||| ||||||| |||||||||||||||| | ||||| ||| || | ||| Sbjct 1131 TACAACGAACATGTGGAATGAGTGCATAAGGATGTTGCATTTTGCTTAGAATACAATCAT 1072 Query 67847 GTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAA 67906 | |||||||||| || ||| | ||||||| | | | | ||| | || ||| | Sbjct 1071 GAAGTTAAAAGTGGCACTAATTACTAGAGGCAAACCATTAAAAAAATTTCTTTAACCAAT 1012 Query 67907 AGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGAT 67966 || ||| ||||| | | | | | | || || ||| |||| ||| | | Sbjct 1011 TGGGCAGATTAAGAAAATAACAGTAGTAGATGTAACAAGA-AAGAATATGTAACAACGTT 953 Query 67967 CCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011 | |||| |||||||| ||| || || ||| | ||||| |||||| Sbjct 952 CTAAGGGCGCATACCTAGATGGAAACTAAGCTTCCACTCACGACC 908 >seq455454 Length=251 Score = 107 bits (118), Expect = 2e-18 Identities = 88/106 (83%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 67735 TAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAA 67794 || |||| |||||||||||| |||| || || ||||| |||||||||| ||| || | Sbjct 108 TACCAAG-GAACCGTGCATAACACTGAATAGGGAACCGTCGAATACACCAACTAAGCCTA 50 Query 67795 GCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACAC 67840 ||| ||||||||||||||||||||||||||||| || ||||| || Sbjct 49 ACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 4 >seq753951 Length=5828 Score = 105 bits (116), Expect = 8e-18 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 67800 TGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTA 67859 ||||||||||||||| | ||| ||| ||| || ||||| || | |||| |||| |||||| Sbjct 1575 TGGAATGGGTGCATAGGAATGATGTACTCAGCCTGGAATACAATCATGAAGTTGAAAGTA 1634 Query 67860 CCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAG 67919 ||||||| || |||| ||| | | ||| || | |||||||| | | || |||| Sbjct 1635 CCAGAAAGTCCTAGAGACATACCATTAGAAAAGTTTCATTGACCGATTAGGTTGATCAAG 1694 Query 67920 AACACAGCGAATGCTGCAGAC-ACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCAT 67978 || ||| | ||| | || || ||| || |||| ||| |||||||||||||| Sbjct 1695 AAAACAAC-AATAGTAACTACAACAAGAGTTGAATATGTAACAACAATCCAAGGACGCAT 1753 Query 67979 ACCAAGACGGTAAGAAAGTTCCCACTGACGACCAC 68013 | | |||| | ||||||||||| | |||||| Sbjct 1754 ATCTAGACAAAATCTAAGTTCCCACTTATGACCAC 1788 >seq161073 Length=246 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/169 (72%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 67846 TGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGA 67905 || |||| ||||||||||| || || |||||||| | ||||| || |||| ||| | Sbjct 246 TGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTAACCAA 187 Query 67906 AAGGATAGACCAAGAACACAGC-GAA--TGCTGCAGACACTGGAGCAGAGTATGCTACAC 67962 || |||| |||||| ||||| | | |||||| | ||||| | ||||| ||| Sbjct 186 TTGGGTAGATCAAGAAAACAGCAGTAGTAGCTGCA---ATAGGAGCTAAATATGCAACAA 130 Query 67963 AGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011 |||||| | ||||||| ||| || || ||||||| ||| |||||| Sbjct 129 CAATCCAATGGTGCATACCTAGATGGAAACTAAGTTCCTACTCACGACC 81 >seq711014 Length=229 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 67796 CATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAA 67855 ||| ||||||||||||||||||||||||||||| || ||||| || | ||| |||| || Sbjct 223 CATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATAATGAAGTTGAA 164 Query 67856 AGTACCAGAAATACCAAGA 67874 |||||||| || || ||| Sbjct 163 GGTACCAGAGATTCCTAGA 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561588663105000