Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq736048 107 3e-18 seq113432 102 1e-16 seq611781 87.8 3e-12 >seq736048 Length=1016 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| | || |||| | ||| |||| || || || ||||| |||| ||| Sbjct 226 ATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTC 285 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || || ||||| || || || ||||| | ||| | ||| || || Sbjct 286 TGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGATTTTTGCTTTCACATTGTCGATGGTG 345 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||| |||||| || || || ||||||||||| || || || || |||||||||||| Sbjct 346 TCTGAACTCTCAACCTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACAAATATTTGC 405 Query 193359 AT 193360 || Sbjct 406 AT 407 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||| || || |||| || | |||| || || || || Sbjct 400 ATTTGCATGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTG 459 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || || | | ||| || | ||||| || ||||| || | ||||| || Sbjct 460 TAGTCCGCCAATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGG 519 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || || || ||||| | ||| | ||| || || || ||| Sbjct 520 TCTGGGGGAATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAA 579 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || || |||||||| || || || || || ||||| |||||||| Sbjct 580 CTCTCAACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 635 >seq113432 Length=226 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| |||||||| || || || || ||||| || |||||||| || ||||| ||| Sbjct 213 TGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCTTCCTTGTCTTGGATT 154 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | |||| ||| || ||||| || ||||||||| || || || || || || Sbjct 153 TTCGCCTTTACATTGTCAACTGTATCTGAGCTCTCAACTTCAAGGGTGATGGTCTTTCCG 94 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || |||||||||||||| Sbjct 93 GTGAGTGTCTTAACAAATATTTGCAT 68 >seq611781 Length=262 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| |||||||| || || || || || || || |||||||| || ||||| ||| Sbjct 240 TGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATT 181 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | |||| ||| || ||||| || || || || || || || || || || Sbjct 180 TTCGCCTTTACATTGTCGATTGTATCAGAGCTTTCCACCTCAAGCGTGATGGTCTTTCCA 121 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||||||||||||||| Sbjct 120 GTCAGTGTCTTTACAAATATTTGCAT 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 891151260210000