Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq702768 104 5e-17 seq736048 102 2e-16 seq689433 89.7 1e-12 >seq702768 Length=508 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || || || | ||||| ||| || || || ||||||| Sbjct 327 CCCCCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCA 268 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| ||||| || || || |||||||| | ||||| ||||| || || Sbjct 267 AGAGTCCGACCATCCTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGG 208 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || ||||| || |||||| ||||| ||||| || || Sbjct 207 ATCCCTTCCTTGTCCTGAATTTTTGCCTTCACATTATCTATAGTGTCTGAGCTCTCAACC 148 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || || || | || || | |||||||||||| Sbjct 147 TCTAGTGTAATTGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCAT 101 >seq736048 Length=1016 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || |||| || || || |||| || | ||||| ||||||||||| | |||||| Sbjct 1 TTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGT 60 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 || ||||| || || ||||| || || || ||||| || ||||| || | ||| Sbjct 61 TGGTCAGGAGGAATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTCT 120 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || |||||||||||||| || || | ||| |||||||| Sbjct 121 GAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 179 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||| | || || || | |||| || || ||| || || || Sbjct 406 ATGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCC 465 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| || |||| |||| |||||||||||||| || | ||||| || || || Sbjct 466 GCCAATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGG 525 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || |||||| ||| |||||| || | ||||| || Sbjct 526 GGAATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCA 585 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| ||||| ||||| | || || | ||| || ||||| Sbjct 586 ACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 635 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || |||| || ||||| |||| || | || |||||||||||||||| ||| Sbjct 226 ATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTC 285 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| || ||||| || || || ||||| ||| ||||| || | Sbjct 286 TGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGATTTTTGCTTTCACATTGTCGATGGTG 345 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| || || || || || || ||||||||||| | || || | |||||| ||| Sbjct 346 TCTGAACTCTCAACCTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACAAATATTTGC 405 Query 192535 AT 192536 || Sbjct 406 AT 407 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| | ||| | || || || | || | |||||| ||| ||||||||| Sbjct 634 ATGCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCA 693 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| || |||| || | || ||||||||||| || | ||||| || || || Sbjct 694 GCCAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGG 753 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || ||||| ||| |||||| || | ||||| || Sbjct 754 GGAATACCCTCCTTGTCCTGGATTTTTGCTTTGACATTATCAATGGTGTCTGAGCTCTCA 813 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||| ||||| | || || | ||| || ||||| Sbjct 814 ACTTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 863 >seq689433 Length=414 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || || || | ||| | ||| || || || ||||||| Sbjct 248 CCCCCACGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCA 189 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| || |||| ||||| || || || || ||||| | ||||| ||||| || || Sbjct 188 AGTGTCCGACCATCCTCCAACTGCTTCCCTGCGAAGATCAGCCTCTGCTGATCTGGAGGG 129 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || || || || ||||| || |||||| ||| | |||||| || || Sbjct 128 ATCCCCTCCTTGTCCTGAATTTTGGCCTTCACATTATCTATGGTATCTGAGCTCTCCACC 69 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || || || || | || || | |||||||||||| Sbjct 68 TCTAGTGTGATCGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCAT 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 974942503893750